BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495744
Length=433
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Complex 1... 508 1e-143
> AT5G51960.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Complex
1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45
proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:21110340-21111348 FORWARD LENGTH=628
Length=628
Score = 508 bits (275), Expect = 1e-143
Identities = 317/337 (94%), Gaps = 3/337 (1%)
Strand=Plus/Plus
Query 1 AAAGAAGAAGATGAGTGGTGAAGTTGTTATAGCTGCTAGAGTTTATCGTGAGCTTCTTAA 60
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 75 AAAGAAGAAGATGAGTGGTGAAGTTGTTTTAGCTGCTAGAGTTTATCGTGACCTTCTCAA 134
Query 61 AGCAGTGGTGAAACATGTTGGTAAAGAAGATTACAAGTCTCATTTCATT-GACTTTGTGA 119
||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 135 AGCAGTGGTGAAACATGTTGGTAAAGAAGATCACAAGTCTCATTTC-TTAGACTTTGTTA 193
Query 120 AGCAAGAATTCCGGAAGAATGCAAACTCGGAGACTATCAACCTTGCCCGCAATTACACTT 179
|||||||||| || |||||||||||||| |||| || |||||||| || |||||||| |
Sbjct 194 AGCAAGAATTTCGAAAGAATGCAAACTCAGAGAAAATAAACCTTGCTCGAAATTACACAT 253
Query 180 ATCTTCTCAATAGCATTCACTCTCACAAGGATCTGTTGTTCTCATACAACATTGCGGTTG 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 254 ATCTTCTCAATAGCATTCACTCTCACAAGGATCTGCTGTTCTCATACAACATTGCGGTTG 313
Query 240 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCTAGTGTAGGGCTTCGTC 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 314 ATAGAACTGAAGAAATGAAACGAGTGCTTAATAAATCTGCAGCCAGTGTAGGGCTTCGTC 373
Query 300 TTCCTGAAGTTTACGAGCCTTGATCAGGCATTC-TTC 335
|||||||||||||||||||||||||| |||||| |||
Sbjct 374 TTCCTGAAGTTTACGAGCCTTGATCATGCATTCATTC 410
Score = 139 bits (75), Expect = 2e-32
Identities = 95/104 (91%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 330 TTCTTCATGTCTATGGACAGGTCTTGGGTTAATTTTTGATTAAATGAGATAGTAGATGGA 389
|||||||| ||| |||||||||||| |||||||||||||||| ||||||||||| ||| |
Sbjct 445 TTCTTCATTTCTGTGGACAGGTCTTTGGTTAATTTTTGATTATATGAGATAGTAAATGAA 504
Query 390 GCCAGAGAGCTCTTCTTTTCCTTTAAGCTTTTAAGTATTGACAA 433
|||||||||||||| || |||||||||||||||||||||||||
Sbjct 505 GCCAGAGAGCTCTT-TT--CCTTTAAGCTTTTAAGTATTGACAA 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20559509341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5