BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495746
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56570.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1749 0.0
AT5G56560.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 346 4e-94
> AT5G56570.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:22902736-22904596 FORWARD LENGTH=1512
Length=1512
Score = 1749 bits (947), Expect = 0.0
Identities = 1272/1419 (90%), Gaps = 62/1419 (4%)
Strand=Plus/Plus
Query 1 CTTTTCTTCTTCCTTTGCACACACGTCCCAAAACAGAGAG-AAGAATTCACCAGAATCAT 59
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 10 CTTTTCTTCTTCCTTTGCACACACGTCCCAAAACAGAGAGCAA-AATTCACCAGAATCAT 68
Query 60 GGAGAGCTGCCAGAAGAAAAAGCAAAAAGAATTGGAGACACCAACAGAGCTCAGTGATAT 119
|||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 69 GGAGAGCTGCCAGAAG--AAA-C--AAA-AATTGGAGACACCAACAGAGCTCAGTGATAT 122
Query 120 GCCTGATGAATTAATCTTGAAGATATTCTCGCTT-CTTCCGTTTTTCAAAGAGGATTTAG 178
||||||||| |||||||| || ||||||||| || ||||||||||| |||||||||||||
Sbjct 123 GCCTGATGACTTAATCTTCAAAATATTCTCG-TTCCTTCCGTTTTTTAAAGAGGATTTAG 181
Query 179 CAACACGTTTCATATCAGAATATGGGAAGGGTCATTGGAAACCGGAGCCGAATGTCATTT 238
||||||||||||||||||||||||||||||||| |||||| || || ||||||| ||| |
Sbjct 182 CAACACGTTTCATATCAGAATATGGGAAGGGTCTTTGGAATCCAGACCCGAATGCCATAT 241
Query 239 TTGATGATCAATCAATCGATATGA---GT-T---TT--GTATATGGATCTTTGATGTCCA 289
|||||||| ||||| ||||||||| || | || ||||||||||||||||||||||
Sbjct 242 TTGATGATGAATCACTCGATATGACTTGTATGAGTTTTGTATATGGATCTTTGATGTCCA 301
Query 290 AGGATGCTCAAATTCTAGATAGCTTGCATCTCAAGCTTAACAATTACTAT-TCTGCTTCA 348
|||||||||| |||||||||||||||||||||||||||| || |||||| | |||||||
Sbjct 302 AGGATGCTCAGATTCTAGATAGCTTGCATCTCAAGCTTAGGAAATACTATAT-TGCTTCA 360
Query 349 GATATCAATTTTCTAGTTCAACTCGGGGTTAATCGATCTGTGAGAGAGCTGAGAATCGAC 408
|||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 361 GATATCAATTTTCTTGTTCAACTTGGGGTTAATCGATCTATGAGAGAGCTGAGAATCGAC 420
Query 409 TTGTTTGGCAAAACCCTAGAACTGCCTTGTTGCTTGAGTACGTGCACAACCCTAAAAGAA 468
|| ||||| |||||||||||| | || |||||||||||||| ||||||||||||||||
Sbjct 421 TTCTTTGGAAAAACCCTAGAATTACCGTGTTGCTTGAGTACCTGCACAACCCTAAAAGTT 480
Query 469 TTGGTACTCGATAATTTAAGCATCAGGCCTGTCCCGCGTTGGTTTCGTTTGCCATCACTC 528
|||||||||||| |||||| |||| | |||||||| |||||||||||||||||||| ||
Sbjct 481 TTGGTACTCGATCATTTAAATATCATGTCTGTCCCGGGTTGGTTTCGTTTGCCATCAGTC 540
Query 529 GAAACTCTCCAACTTTCATCGGTTGCAGGAGGCA--AT-TCTGGTGCAAGTCTTATAAGA 585
||||||||||| |||||||||||| | || |||| | | || | ||||||||||||||
Sbjct 541 GAAACTCTCCAGCTTTCATCGGTTACCGGGGGCAGCAACTATGTTCCAAGTCTTATAAGA 600
Query 586 ATT-TACTCTGTTCATGAACGTTTGGTTGTACACCAAAACAGATATGACGATGTGACTAT 644
|| | ||||||||||||||||||||||||| ||||||||||| || | ||| || | |
Sbjct 601 -TTATGCTCTGTTCATGAACGTTTGGTTGTAGACCAAAACAGAAATAAAGATCTGG-T-T 657
Query 645 AATCAATATCAATGTGCCTACTTTGAGGAGCTTATCTATCGATAACAGGA-AAGGG-ATG 702
||| | | |||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 658 AAT-A-T--CAATGTGCCTACTTTGAGGAGCTTATCTATCGATAACAAGAGAAGGGGAC- 712
Query 703 TATGGGCGCAC-CGGTGGCTTTTGGATAAATGCTCCTTCTTTGATGTTCTTGAACATTAA 761
||| || ||| |||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 713 -ATGTGC-CACTCGGTAGCTTTTGGATAAATGTTCCTTCTTTGATGTTTTTGAACATTAA 770
Query 762 GGATACATTC-AGTAACTGTATAATGTTTGAATCCATGCCTGCGATGATCAAATCGGATA 820
|||||||||| | ||| ||| | || ||||| |||||||||||||||||| || |||
Sbjct 771 GGATACATTCCA--AACA--ATA-T-TT-GAATCTATGCCTGCGATGATCAAAGCGAATA 823
Query 821 TCGAGGTTACTCAT-A--A--C-CAATCTGAGAAGTTCTTAGAGTCTCTTACCTCAATCC 874
|||||||| ||||| | | | ||||||| ||||||| |||| ||||||||||||| ||
Sbjct 824 TCGAGGTTGCTCATGACCAATCGCAATCTGTGAAGTTCATAGAATCTCTTACCTCAACCC 883
Query 875 GACATCTTTCTCTTTGTTCTCCAACTTCA-ATGACTCCATATCCTACA-GACACAAAATT 932
||||||||| ||||||||||||||||||| | || ||||||||||| | | |||||| ||
Sbjct 884 GACATCTTTGTCTTTGTTCTCCAACTTCAGA-GAATCCATATCCTA-ATGGCACAAAGTT 941
Query 933 CCCCAATCTTGAACATCTAAAGCTATGTACATGTTCTGCGGGATGGCAGAATCTACTTGC 992
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CTCCAATCTTGTACATCTAAAGCTATGTACATGTTCTGCGGGATGGCAGAATCTACTTGC 1001
Query 993 GTGTATGCTCAATGACGCTCCCAATCTTCGATCTCTTACACTTAAGTTGAGACATAAAAA 1052
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1002 GTGTATGCTCAATGACGCTCCCAATCTTCGTTCTCTTACTCTTAAGTTGAGACA-AAAAT 1060
Query 1053 C-GATATCAATCCGAAGGGCA-TCTGGGAAAAACCAACAGTTGTTCCTGAATGTCTATCT 1110
| ||| ||||||||||| | |||||||||| |||||||| |||||||||||| |||||
Sbjct 1061 CCGATGTCAATCCGAAGAA-AGTCTGGGAAAAGCCAACAGTCGTTCCTGAATGTTTATCT 1119
Query 1111 ACGCGTCTTGAGATCTTGAAATGGAGAGATTATGAAGGAACTGAGCATGAGAAGGATATG 1170
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1120 ACGCGTCTTGAGATCTTGAAATGGAGAGATTATGAAGGCACTGAGCATGAGAAGGATATG 1179
Query 1171 GTTGGGTACATACTAGCAAACGCTACTTTCCTACAGAGGGCGACATTCTCAACGAAATG- 1229
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1180 GTTGGGTACATACTAGCAAACGCTACTTTTCTACAGAGGGCAACATTCTCAACGAAA-GA 1238
Query 1230 TAGAGACCAATGTGATTCCAGGTTCAGCGAGTTACAGTCTATGGAGAGAGTTTCAGAGAT 1289
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 TAGAAACCAATGTGATTCCAGGTTCAGCGAGTTACAGTCTATGGAGAGAGTTTCAGAGAT 1298
Query 1290 ATGTGAGTTTGTGTTTGACTAATGTGACTCTCTTATGTGATGGTGTGTGTCTCTCTAGAA 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 ATGTGAGTTTGTGTTTGACTAATGTGACTCTCTTATGTGATGGTGTGTGTCTCTCTAGAA 1358
Query 1350 GACACAGAGACGTTCTTAGCTTTCTTCTTCCTTTCCCTT 1388
||| || ||||||||||||||||||||||||||||||||
Sbjct 1359 GACGCAAAGACGTTCTTAGCTTTCTTCTTCCTTTCCCTT 1397
> AT5G56560.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr5:22899724-22901985 FORWARD
LENGTH=1824
Length=1824
Score = 346 bits (187), Expect = 4e-94
Identities = 499/640 (78%), Gaps = 60/640 (9%)
Strand=Plus/Plus
Query 92 TGGAGACACCA-A-CAGAGCTCAGTGA-TATGCCTGATGAATTAATCTTGAAGATATTCT 148
|||||| | || | ||| ||||||||| | |||| |||||||| ||||||||||||| |
Sbjct 2 TGGAGA-AACAGACCAG-GCTCAGTGACT-TGCCAGATGAATTGCTCTTGAAGATATTGT 58
Query 149 C-GCTTCTTCCGT-T-TTTCAAAGAGGA-TTTAGCAACACGTTTCATATC-AGAATATGG 203
| || ||||| | | ||| |||| || |||||| |||||| ||||||| || | | |
Sbjct 59 CAGC-ACTTCC-TATGTTT-AAAG-TGACTTTAGCCACACGTCTCATATCAAG-ACGTTG 113
Query 204 GAAGGGTCATTGGAAACCGGAGCCGAATGTCA--TTT--T--TGATG--AT--CA-ATCA 252
||| |||| |||||||| || |||| |||||| ||| | ||||| || || | |
Sbjct 114 GAAAGGTCCTTGGAAACTGGTGCCGGATGTCACGTTTGATGATGATGATATACCATTTAA 173
Query 253 -A---TCG--A----TATGAGTTTTGTATATGGATCTTTGATGTCCAAGGATGCTCAAAT 302
| | | | |||||||||||| ||||||||||| |||| || |||||||||||
Sbjct 174 GAGTTTTGAAACTTTTATGAGTTTTGTTTATGGATCTTTCTTGTCTAACGATGCTCAAAT 233
Query 303 TCTAGATAGCTTGCATCTCAAGCTTAA-CAATTACTATTCTGCTTCAGATATCAATTTTC 361
|||||| || ||||||||||||||||| ||| | ||||||||||| || |||||||||
Sbjct 234 TCTAGACAGATTGCATCTCAAGCTTAACCAA-AAGTATTCTGCTTCGGACATCAATTTT- 291
Query 362 T-AGTTCAACTCGGGGTTAATCGATCTGTGAGAGAGCTGAGAATCGACTTGTTTGGCAAA 420
| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 292 TGGGTTCAAGTCGCGGTTAACCGATCTGTGAGAGAGCTGAGAATCGACTTGTTTGGCAAA 351
Query 421 ACCCTAGAACTGCCTTGTTGCTTGAGTACGTGCACAACCCTAAAAGAATTGGTACTCGAT 480
||||||||| |||| ||||| ||| || | || | ||| |||||||||||| |||| |
Sbjct 352 ACCCTAGAATTGCCGTGTTGTTTGTGTTCTTGTATAACACTAAAAGAATTG--ACTCTAC 409
Query 481 A--ATTTAAGCATCA-GGCCTGTCCCG-CGTTGGTTTCGTTTGCCATCACTCGAAAC-TC 535
| ||||| | |||| || ||||||| | ||||||||| |||||||||||| |||| |
Sbjct 410 ATGATTTATGTATCAAGGT-TGTCCCGGC-TTGGTTTCGCTTGCCATCACTCAAAACGT- 466
Query 536 TCCAACTTTCATCGGTT--G--CAGGAG-G-CA-ATTCTGGTGCAAGTCTTATAAGAATT 588
| || |||| |||||| | | ||| | | ||| || ||||||| || ||||||||
Sbjct 467 TGCACCTTTTGTCGGTTAAGTTCTCGAGTGACGGATT-TGTTGCAAGTATTTTAAGAATT 525
Query 589 TACTCTGTTCATGAACGTTTGGTTGTACACCAAAACAGATATGACGATGTGACTATAATC 648
| | |||||| |||||||||||||||| || || || | || | |||||| ||| |
Sbjct 526 TGCCCTGTTCTTGAACGTTTGGTTGTAGACGGAACCAAAGGTGTCAATGTGAAGATACCC 585
Query 649 AATATCAATGTGCCTACTTTGAGGAGCTTATCTAT-CGAT 687
||||| ||||||||| |||||||||||||||| | ||||
Sbjct 586 AATATGGATGTGCCTAATTTGAGGAGCTTATCTTTTCGAT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5