BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495747
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56580.1 | Symbols: ATMKK6, ANQ1, MKK6 | MAP kinase kinase 6... 1989 0.0
> AT5G56580.1 | Symbols: ATMKK6, ANQ1, MKK6 | MAP kinase kinase
6 | chr5:22904689-22906661 REVERSE LENGTH=1274
Length=1274
Score = 1989 bits (1077), Expect = 0.0
Identities = 1162/1203 (97%), Gaps = 6/1203 (0%)
Strand=Plus/Plus
Query 20 AAAG-aaaaaaaTGGTGAAGATCAAATCGAACTTGAAGCAGCTTAAGCTCTCCGTTCCAG 78
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 AAAGAAAAAAAATGGTGAAGATCAAATCGAACTTGAAGCAGCTTAAGCTCTCCGTTCCAG 90
Query 79 CTCAAGAATCCCCAATCTCTTCCTTCTTGACTGCGAGTGGAACGTTTCACGATGGAGATT 138
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 91 CTCAAGAATCCCCAATCTCTTCCTTCCTGACTGCGAGTGGAACATTTCACGATGGAGATT 150
Query 139 TTCTTCTGAATCAAAAGGGGTTAAGGTTGATGTCAGATGAGAAGCAATCAAGGCAATCTG 198
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 151 TTCTTCTGAATCAAAAGGGGCTAAGGTTGACGTCAGATGAGAAGCAATCAAGGCAATCTG 210
Query 199 ATAGCAAGGAGCTTGATTTCGAAATTACCGCTGAAGACTTAGAGACTGTGAAAGTCATCG 258
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 211 ATAGCAAGGAGCTTGATTTCGAAATTACTGCTGAAGACTTAGAGACTGTCAAAGTCATCG 270
Query 259 GAAAAGGCAGTGGTGGTGTTGTTCAATTAGTTCGTCATAAATGGGTTGGCAAATTCTTTG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GAAAAGGCAGTGGTGGTGTTGTTCAATTAGTTCGTCATAAATGGGTTGGCAAATTCTTTG 330
Query 319 CTATGAAGGTCATACAGATGAATATACAAGAGGAGATCCGTAAGCAAATTGTCCAGGAGC 378
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 331 CTATGAAGGTCATACAGATGAATATACAAGAAGAAATCCGTAAGCAAATTGTTCAGGAGC 390
Query 379 TCAAAATAAACCAAGCATCATCGCAATGTCCACATGTAGTTGTTTGCTACCATTCTTTCT 438
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 391 TTAAAATAAACCAAGCATCATCACAATGTCCACATGTAGTAGTTTGCTACCATTCTTTCT 450
Query 439 ATCACAATGGAGCCTTTTCTCTTGTGCTTGAATACATGGACCGGGGATCTCTTGCGGATG 498
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 451 ATCACAATGGAGCCTTTTCGCTTGTGCTTGAATACATGGACCGTGGATCTCTTGCGGATG 510
Query 499 TGATAAGACAAGTCAAGACTATTCTTGAACCTTACCTTGCTGTTGTCTGTAAACAGGTTT 558
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TGATTAGACAAGTCAAGACTATTCTTGAACCTTACCTTGCTGTTGTCTGTAAACAGGTTT 570
Query 559 TGCTAGGCCTTGTGTACCTGCACAACGAAAGACATGTCATACACAGAGACATTAAGCCTT 618
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 571 TGCTAGGTCTTGTGTACCTACACAACGAAAGACATGTCATACACAGAGACATTAAGCCAT 630
Query 619 CAAACCTTCTTGTAAACCATAAAGGGGAAGTGAAAATCTCAGATTTTGGTGTAAGTGCAA 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CAAACCTTCTTGTAAACCATAAAGGGGAAGTGAAAATCTCAGATTTTGGTGTAAGTGCAA 690
Query 679 GTCTTGCTAGCTCCATGGGACAGAGGGACACATTTGTTGGAACCTACAACTATATGTCGC 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GTCTTGCTAGCTCCATGGGACAGAGGGACACATTTGTTGGAACCTACAACTATATGTCGC 750
Query 739 CTGAGAGGATCAGTGGAAGCACATATGACTACAGCAGTGACATTTGGAGTTTGGGCATGT 798
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 751 CTGAGAGGATTAGTGGAAGCACATATGACTACAGCAGTGACATTTGGAGTTTGGGGATGT 810
Query 799 CAGTGTTAGAATGCGCAATAGGAAGATTCCCTTACTTAGAATCTGAAGATCAGCAAAACC 858
||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 811 CAGTGTTAGAATGTGCAATAGGAAGATTTCCTTATTTAGAATCTGAAGATCAGCAAAACC 870
Query 859 CACCAAGCTTTTATGAACTCTTGGCAGCAATCGTAGAGAATCCACCACCAACTGCTCCTT 918
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 871 CGCCAAGCTTTTATGAACTCTTGGCAGCAATAGTAGAGAATCCACCACCAACTGCTCCTT 930
Query 919 CTGATCAATTCTCACCTGAATTCTGCTCCTTTGTATCAGCCTGCATACAAAAAGATCCTC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 CTGATCAATTCTCACCTGAATTCTGCTCCTTTGTATCAGCCTGCATACAAAAAGATCCTC 990
Query 979 CAGCAAGAGCATCATCTTTGGAACTCTTGAGTCATCCATTCATAAAAAAGTTTGAAGACA 1038
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 991 CAGCAAGAGCATCATCTTTGGACCTCTTGAGTCATCCATTCATAAAAAAGTTTGAGGACA 1050
Query 1039 AGGATATTGATCTCGGGATACTTGTTGGCACTCTGGAACCACCTGTTAACTACCTTAGAT 1098
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 AGGATATCGATCTCGGGATACTTGTTGGCACTCTGGAACCACCTGTTAACTACCTTAGAT 1110
Query 1099 AAGTAAACCCTCTTCTTCCGCATTTGCATTTGGTATATGATATGATATGATAAGATACAT 1158
|||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 1111 AAGTAAGCCCTCTTCTTCTGCATTTGCATTTGGTATATGATATGATA--A---GATACAT 1165
Query 1159 GATATTGTGTAATGTATCTCTACAGATTATTACTTGACAATGAAAGTTGAATGAGATTTT 1218
||||||||||||||| |||||| ||| ||||||||||| || ||||||||||||||||||
Sbjct 1166 GATATTGTGTAATGTGTCTCTAAAGACTATTACTTGACTATAAAAGTTGAATGAGATTTT 1225
Query 1219 ATT 1221
|||
Sbjct 1226 ATT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5