BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495751
Length=875
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56610.1 | Symbols: | Phosphotyrosine protein phosphatases ... 1112 0.0
> AT5G56610.1 | Symbols: | Phosphotyrosine protein phosphatases
superfamily protein | chr5:22916710-22918338 FORWARD LENGTH=916
Length=916
Score = 1112 bits (602), Expect = 0.0
Identities = 809/902 (90%), Gaps = 41/902 (5%)
Strand=Plus/Plus
Query 1 TTCTTCCCGGCGATGGCCGGTGGAACGGAGGAAGATGACAAGACGCAGCAGCGATCATCA 60
||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 17 TTCTTCCCGGCGATGACCGATGAAACGGAGGAAGATGACACGACGCAGCAGCGATCATCA 76
Query 61 CGAAACGACGGCGTTTCAAAGAAGAAGAAG-AAGAGTGTAGGTTCGAAGGGAGATAAAGC 119
||||||||||||||||||||||| ||| | ||| | || || ||||||||||||||
Sbjct 77 CGAAACGACGGCGTTTCAAAGAATAAG-GGTAAG-G-GT---TT-TAAGGGAGATAAAGC 129
Query 120 AAAGAGAGCTCTAATCGGAGCTGGTGGTCGGATCCTGTTTTATCCGACACTTTTATACAA 179
|||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct 130 AAAGAGGGCTCTAATCGGAGCTGGTGGTCGGATCCTTTTTTACCCAACTCTTTTGTACAA 189
Query 180 CCTCGTCCGCTTCAAACTCCAGTCTCAATTCAGATGGTGGGATCAAATCGATGAGTATCT 239
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 190 CCTCGTCCGCTTTAAACTCCAGTCTCAATTCCGATGGTGGGATCAAATCGATGAGTATCT 249
Query 240 TCTGATGGGAGCGGTTCCATTTCGTAAGGATGTTCCGCGACTAAAACAA-TTAGGTGTTG 298
| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 250 TTTGATGGGAGCGGTTCCATTTCGTAAGGATGTTCCGAGACTAAAA-AAGTTAGGTGTTG 308
Query 299 GTGGCGTGATTACTCTTAATGAACCTTATGAGACTTTGGTACCATCCTCTTTGTACAATG 358
|||| || || ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 309 GTGGGGTAATCACTCTTAATGAACCTTATGAGACTTTGGTACCATCTTCTTTGTACAGTG 368
Query 359 CTTATGAAATGGAGCATCTAGTGATACCAACACGGGATTACTTGTTTGCTCCTTCGATTG 418
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 369 CTTACGAAATGGAGCATCTAGTGATACCAACACGGGATTACTTGTTTGCTCCTTCAATTG 428
Query 419 -CAGATATAACCCGAGCTGTAAACTTCATTCACAAGAATGCTTTGCTTGGTAAAACTACC 477
| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 429 TC-GATATAACCTTAGCTGTAAACTTCATTCACAAGAATGCTTTACTTGGTAAAACAACA 487
Query 478 TACGTCCATTGCAAAGCTGGTCGCGGAAGAAGTACTACCGTTGTTCTCTGTTATCTGATT 537
|| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 488 TATGTCCATTGCAAAGCTGGTCGAGGAAGGAGTACTACTGTTGTTCTCTGTTATCTGATT 547
Query 538 GAACATAAGAGTATGACTGTAGCTGCAGCTTTTGAACACGTGCGCTCGATAAGACCGCGG 597
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 548 GAACATAAGAGTATGACTGTGGCTGCAGCTTTCGAACACGTGCGCTCGATAAGACCCCGG 607
Query 598 GTTTTATTGCA-CGCTTCACAGAGGAAGGTTGTTGAGGAATTTCA-CAGATTACAATCTC 655
||||| ||||| | |||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct 608 GTTTTGTTGCATC-CTTCGCAGAGGAAGGTTGTTGAGGAATTT-AGCAGATTACAATCTC 665
Query 656 CTTTGAGCGAATCAGCATTCATCGCAACCTCTAATGATATTGTAAGTTAAATGGCAAAGA 715
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 666 CTTTGAGCGAATCAACATTCATCGCAACCTCTGGTGATATTGTAAGTTAAATGGCAGAGA 725
Query 716 CTA---AGTCA--G-TCA---T-------A---A-CT-CAGCTAAGCAGGAGGTGTTTTG 754
||| ||||| | ||| | | | | |||||||||||||| | |||||
Sbjct 726 CTAGTCAGTCATAGCTCAGCATTTCCGGCATTGATCAACAGCTAAGCAGGAGCT-TTTTG 784
Query 755 ACATGACTTCTCTGCCTCCTTTTGGTT-TGGTTAAAATCTCCGGTTTTGATCTTCTGATT 813
|| || |||||||| ||||||||||| || ||||||||| ||||||||||| |||||||
Sbjct 785 -CAAGATTTCTCTGCTTCCTTTTGGTTCTG-TTAAAATCTTCGGTTTTGATCATCTGATT 842
Query 814 CGGCTTGGTTCCTGAGTATAACAAAATGACTTGTTGATTAACAATTGTTTAGAATACAAA 873
|||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct 843 CGGCTTGGTTCCTGAGTATAACAAAATGACTTGTTGATTAACAATTGTGTATAATAAAAA 902
Query 874 TT 875
||
Sbjct 903 TT 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42699024950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5