BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495753
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56620.1 | Symbols: anac099, NAC099 | NAC domain containing ... 1797 0.0
> AT5G56620.1 | Symbols: anac099, NAC099 | NAC domain containing
protein 99 | chr5:22918521-22921139 REVERSE LENGTH=1161
Length=1161
Score = 1797 bits (973), Expect = 0.0
Identities = 1112/1176 (95%), Gaps = 22/1176 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAATAGTAAATGTAACCTCATAGATTCAAAGCTCGAAGAACATCATCATCTTTGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAATAGTAAATGTAACCTCATAGATTCAAAGCTCGAAGAACATCATCATCTTTGC 60
Query 61 GGATCAAAACATTGTCCTGGATGTGGTCGCATGATTCAAGCTGCTACTAAACCAAATTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATCAAAACATTGTCCTGGATGTGGTCGCATGATTCAAGCTGCTACTAAACCAAATTGG 120
Query 121 GTTGGATTGCCAGCTGGAGTGAAATTCGATCCGACAGATCAAGAACTTATAGAACATTTA 180
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTGGATTGCCGGCAGGAGTGAAATTCGATCCGACAGATCAAGAACTTATAGAACATTTA 180
Query 181 GAAGCAAAAGTGAAGGGAAAAGAAGAAAATAAGAAATGGTCATCGTCTCATCCACTTATA 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GAAGCAAAAGTGAAGGGAAAAGAAGAAAATAAGAAATGGTCGTCGTCTCATCCACTTATA 240
Query 241 GATGAATTTATTCCCACCATTGATGGAGAAGATGGGATATGTTACACTCATCCTCAGAAG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GATGAATTTATTCCCACCATTGATGGAGAAGATGGAATATGTTACACTCATCCTCAGAAG 300
Query 301 CTTCCAGGGGTGACAAGAGATGGCTTGAGCAAACACTTCTTCCACAAACCATCAAGAGCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCCAGGGGTGACAAGAGATGGCTTGAGCAAACACTTCTTCCACAAACCATCAAGAGCT 360
Query 361 TACACAACCGGAACAAGGAAACGACGTAAAATAATCCAAACCGATCACGACTCCGAGGTA 420
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 361 TACACAACCGGAACAAGAAAACGACGTAAAATAATTCAAACCGATCACGACTCTGAGTTA 420
Query 421 ACCGGATCATCAGAAACCAGGTGGCACAAAACGGGCAAAACAAGACCGGTTATGATCAAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCGGATCATCAGAAACCAGGTGGCACAAAACGGGCAAAACAAGACCGGTTATGATCAAC 480
Query 481 GGTCAACAAAGAGGATGCAAGAAGATATTAGTACTCTACACAAACTTCGGCAAGAATCGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTCAACAAAGAGGATGCAAGAAGATATTAGTACTCTACACAAACTTCGGCAAGAATCGT 540
Query 541 CGACCGGAGAAAACAAATTGGGTGATGCATCAATATCATTTAGGCATCAATGAGGAAGAG 600
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 541 CGACCGGAGAAAACAAATTGGGTGATGCATCAATATCATTTAGGGATTAATGAGGAAGAG 600
Query 601 AGAGAAGGAGAGCTTGTGGTCTCTAAGATCTTTTATCAGACACAACCTAGACAGTGTGTT 660
||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 601 AGAGAAGGAGAACTTGTGGTCTCCAAGATATTTTATCAGACACAACCAAGACAGTGTGTT 660
Query 661 AGTAATATTCATTGGTCTGATAATCATGGTTCCAAAGACATGATCGGAATTGGTGTCGGA 720
||||||| | ||||||||||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 661 AGTAATACTAATTGGTCTGATCACCATGGTTCCAAGGACGTGATCGGAATTGGTGTCGGA 720
Query 721 GATGAGATTTCC-G--TAGCTGCCACGTTGCAGACTCTTGGCTCCGGTGTCGGTGACATT 777
|||||||||||| | |||||||||||||||||| |||||||||||||| || | |
Sbjct 721 GATGAGATTTCCAGCGTAGCTGCCACGTTGCAGAGTCTTGGCTCCGGTGACG-T--C--- 774
Query 778 GTTTCTAGGGTTAATATGAATCCCTATACAAGAGGCTTTGATGAGGGGACAGCCGAAGCT 837
|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 775 GTTTCTAGGGTTAATATGCATCCCCATACAAGATCCTTTGATGAGGGGACAGCCGAAGCT 834
Query 838 TCAAAGGGAAGAGAAAACCAGCGTGTGTATGGCACGTGCGAGGAAGTACATAATGAGATC 897
|||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||| ||||
Sbjct 835 TCAAAGGGAAGAGAGAACCAGCATGTGTCTGGCACGTGCGAGGAAGTACATGATGGGATC 894
Query 898 TTAAcatcatcaacatcatcaatgtcctctcatcatatgattcatgatcatcataatcaa 957
| | | | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 --A---T-A--A-CATCATCAATGTCATCTCATCATATGATTCATGATCATCATAATCAA 945
Query 958 catcatcaaatcggagatagaagaga-tcttcacatgtcatcatcatatcCCATGACCCC 1016
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 946 CATCATCAAATCGGAGATAGAAGAGAAT-TTCACATGTCATCATCATATCCCATGACCCC 1004
Query 1017 TACTATCACATCACGAA-ATGACTCGATCTTCCATGGTACAAGTACTATGCCCTTTCAGG 1075
|||||||||||||| || |||| || |||||||||| |||||||||||||||||||||||
Sbjct 1005 TACTATCACATCAC-AACATGAGTCAATCTTCCATGTTACAAGTACTATGCCCTTTCAGG 1063
Query 1076 GGTCGGTCGTCTGGTTCGGGATTAGAAGACCTAATTATGGGTTGTACCACAGCTACTTGC 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1064 GGTCGGTCGTCTGGTTCGGGATTAGAAGACCTAATTATGGGTTGTACCACAGCTACGTGT 1123
Query 1136 ATAGAAGACGTAAGTTTCTAACGAATACGTGTATTT 1171
| |||||||||||||||||||||||| ||||||||
Sbjct 1124 ACAGAAGACGTAAGTTTCTAACGAATTTGTGTATTT 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5