BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495755
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56640.1 | Symbols: MIOX5 | myo-inositol oxygenase 5 | chr5:... 1786 0.0
AT4G26260.2 | Symbols: MIOX4 | myo-inositol oxygenase 4 | chr4:... 797 0.0
AT4G26255.1 | Symbols: | other RNA | chr4:13293941-13296465 FO... 69.4 7e-11
> AT5G56640.1 | Symbols: MIOX5 | myo-inositol oxygenase 5 | chr5:22927329-22929643
REVERSE LENGTH=1155
Length=1155
Score = 1786 bits (967), Expect = 0.0
Identities = 1095/1156 (95%), Gaps = 11/1156 (1%)
Strand=Plus/Plus
Query 1 GAAGATGACTATCTCCGTCGAAAACCCTGTTTTTGTACATGAGGACTCTACGACGCAGAA 60
|||||||| ||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 2 GAAGATGAATATCTCCGTCGAAAACCCTGTTTTTGTACATGAGGACTCGACAACGC---A 58
Query 61 GAAGACCGGAGAGTTACGAATGGACAGCGGA-ATACCAATGTCGAAGATATCATCCAATG 119
||||||||||||||||||| |||||||| || |||||||||||||||||||||||| |||
Sbjct 59 GAAGACCGGAGAGTTACGATTGGACAGC-GACATACCAATGTCGAAGATATCATCCGATG 117
Query 120 ATGAAGTGTTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATGAAGTGTTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGG 177
Query 180 ATACAAATAGCGAGAGGCAAAAGAGCGTCGAACATTTCTATAAAACACAACACATTAACC 239
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 178 ATACAAACAGCGAGAGGCAAAAGAGCGTCGAACATTTCTATGCAACACAACACACTAACC 237
Query 240 AAAGTTTGGACTTTGTAAAGAAAATGAGAAGTGAGTATGGAAAATTGGACAAGATGGTGA 299
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAACTTTAGACTTTGTACAGAAAATGAGAAGTGAGTATGGAAAATTGGACAAGATGGTGA 297
Query 300 TGAACATTTGGGAATGTTGTGAACTTTTAAACGAAGTGGTGGACGAGAGTGATCCCGACC 359
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 298 TGAACATTTGGGAATGTTGTGAACTTTCAAAAGAAGTGGTGGACGAGAGTGATCCCGACC 357
Query 360 TCGACGAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCGACGAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATC 417
Query 420 CAAACGAAGATTGGCTTCACCTCACTGCTCTTATCCATGATCTTGGGAAGGTTCTTACTC 479
| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 418 CTAACGAAGATTGGCTTCATCTCACTGCGCTTATCCATGATCTTGGGAAGGTTCTTACCC 477
Query 480 TACCACAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGGT 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 TACCACAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTTCCTGTTGGGT 537
Query 540 GTGCATTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACGCTGATTTTAACA 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 GTGCATTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACCCTGATTTTAACA 597
Query 600 ATCCAAAGTATAATACCAAAACTGGAATTTATTCTGAAGGATGTGGACTTGAGAATGTTC 659
| || ||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 598 ACCCTAAGTACAATACCAAAGCTGGAATTTATTCTGAAGGCTGTGGACTTGAAAATGTTC 657
Query 660 TTATGTCATGGGGACATGATGACTACATGTATCTGGTGGCTAAGGAGAATGGAAGCACCC 719
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 TTATGTCATGGGGACATGATGACTACATGTATCTGGTGGCCAAGGAGAATGGAAGCACCT 717
Query 720 TACCATCCTCGGGACTATTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTG 779
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TACCATCCCCGGGACTATTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTG 777
Query 780 GAGCTTACACTCACCTTATGAACGAAGAAGACAAGGAAAATCTCAAATGGCTCCATGTTT 839
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 778 GAGCTTACACTCACCTTATGAACGAGGAAGACAAGGAGAATCTCAAATGGCTTCATGTTT 837
Query 840 TCAACAAGTACGACTTATACAGCAAGAGCAAAGTACACGTGGATGTCGAGAAGGTTAAGC 899
| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 838 TTAACAAGTATGACTTATACAGCAAGAGCAAAGTACACGTCAATGTCGAGAAGGTTAAGC 897
Query 900 CGTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCTGAGGTGGTGAAAACTGC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 CGTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCTGAGGTGGTGAAAACGGC 957
Query 960 ATCAAGGCCGTCCAAAAAA-GTCTACTATTAGAAAGATAAAAATGGTGAGTGTGATTGAT 1018
||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||
Sbjct 958 ATCGAGGCCGTCCAAAAAAAGTCTACTATTAGAAAGATAAAA-TGGTGTGTGTGTTTGAT 1016
Query 1019 TAGTAGTCGTTTAAG-AT-T-ATTGCCCAGTTGATAAAGTTGTATTGTTACATTAGCTAA 1075
|| | |||||||||| || | ||||||||||| |||||||||||||||||||||||||||
Sbjct 1017 TACTTGTCGTTTAAGCATATTATTGCCCAGTTAATAAAGTTGTATTGTTACATTAGCTAA 1076
Query 1076 TGTTAATGCTAATGTTTATACAAACTATTATTGTATC-CGTCTGTCCTACTATAAATTAA 1134
|||||||||||||||| |||||||| | |||||||| ||||||||||| |||||| |||
Sbjct 1077 TGTTAATGCTAATGTTGATACAAACGGTAATTGTATCTCGTCTGTCCTATTATAAACTAA 1136
Query 1135 AATAATATTTTCTTCT 1150
||| ||||||||||||
Sbjct 1137 AATGATATTTTCTTCT 1152
> AT4G26260.2 | Symbols: MIOX4 | myo-inositol oxygenase 4 | chr4:13297803-13300319
FORWARD LENGTH=1266
Length=1266
Score = 797 bits (431), Expect = 0.0
Identities = 703/834 (84%), Gaps = 19/834 (2%)
Strand=Plus/Plus
Query 128 TTTTTGGCTCCTGAGATGAACGCATTTGGTCGTCAATTCAGAGACTACACGGATACAAAT 187
|||||||||||||||||||| |||||||| || |||||||| |||| || ||| |
Sbjct 272 TTTTTGGCTCCTGAGATGAATGCATTTGGCCGCCAATTCAGGGACT--AC-GATGTTGAG 328
Query 188 AGCGAGAGGCAAAAGAGCGTCGAACA-TTTCTATAAAACACAACACATTAACCAAAGTTT 246
|| |||||||||||| |||||||| | ||| || | | ||||||||| ||||||| | |
Sbjct 329 AGTGAGAGGCAAAAGGGCGTCGAAGAGTTT-TACAGATTACAACACATCAACCAAACTGT 387
Query 247 GGACTTTGT-AAAGAAAATGAGAAG-TGAGTATGGAAAATTGGACAAGATGGTGATGAAC 304
|||||||| ||| || ||||| | ||| ||||||||||| || || |||||||||| |
Sbjct 388 CGACTTTGTGAAA-AAGATGAG-GGCTGAATATGGAAAATTAGATAAAATGGTGATGAGC 445
Query 305 ATTTGGGAATGTTGTGAACTTTTAAACGAAGTGGTGGACGAGAGTGATCCCGACCTCGAC 364
||||||||||||||||| ||| | || || || ||||| ||||||||||| || || |||
Sbjct 446 ATTTGGGAATGTTGTGAGCTTCTCAATGAGGTTGTGGATGAGAGTGATCCAGATCTTGAC 505
Query 365 GAACCACAAATTCAACATTTGCTTCAATCTGCGGAAGCAATCCGTAAAGATTATCCAAAC 424
|| || || ||||| ||||||||||||||||| ||||| ||||| |||||||| || ||
Sbjct 506 GAGCCCCAGATTCAGCATTTGCTTCAATCTGCCGAAGCCATCCGCAAAGATTACCCTAAT 565
Query 425 GAAGATTGGCTTCACCTCACTGCTCTTATCCATGATCTTGGGAAGGTTCTTACTCTACCA 484
|||||||||||||| || || ||||||||||||||||||||||| ||| ||||||| |||
Sbjct 566 GAAGATTGGCTTCATCTGACCGCTCTTATCCATGATCTTGGGAAAGTTATTACTCTTCCA 625
Query 485 CAGTTTGGAGGGCTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGGTGTGCA 544
|| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 626 CAATTCGGAGGACTTCCTCAATGGGCTGTTGTTGGTGACACATTCCCTGTTGGATGTGCA 685
Query 545 TTTGATGAATCTAACGTACACCACAAGTATTTTATGGAAAACGCTGATTTTAACAATCCA 604
|||||||||||||||||||| |||||||| ||| |||||||| | |||||| |||| | |
Sbjct 686 TTTGATGAATCTAACGTACATCACAAGTACTTTGTGGAAAACCCAGATTTTCACAA-CGA 744
Query 605 AAG-TATAATACCAAAACTGGAATTTATTCTGAAGGATGTGGACTTGAG-AATGTTCTT- 661
|| || || || |||| ||| ||||| |||||||| |||||| || | ||||| | |
Sbjct 745 AACCTACAACACTAAAAATGGGATTTACTCTGAAGGGTGTGGA-TTAAACAATGT-CATG 802
Query 662 ATGTCATGGGGACATGATGACTACATGTATCTGGTGGCTAAGGAGAATGGAAGCACCCTA 721
||||| ||||| ||||| ||||||||||| ||||||||||| || || ||||| ||| |
Sbjct 803 ATGTCTTGGGGCCATGACGACTACATGTACCTGGTGGCTAAAGAAAACGGAAGTACCTTG 862
Query 722 CCATCCTCGGGACTA-TTCATCATCCGATACCATTCCTTTTATCCATTGCACAAGGCTGG 780
|| || | |||| | || ||||| |||||||||||||||| || ||||||| ||||||
Sbjct 863 CCGTCGGCTGGAC-AGTTTATCATAAGATACCATTCCTTTTACCCTTTGCACACGGCTGG 921
Query 781 AGCTTACACTCACCTTATGAACGAAGAAGACAAGGAAAATCTCAAATGGCTCCATGTTTT 840
|| ||||| || ||||||||||| ||||||||||| ||||| || ||||| || |||||
Sbjct 922 AGAATACACCCATCTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTT 981
Query 841 CAACAAGTACGACTTATACAGCAAGAGCAAAGTACACGTGGATGTCGAGAAGGTTAAGCC 900
||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| |||||
Sbjct 982 CAACAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTCAAGCC 1041
Query 901 GTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAATCT-GAGGTGGTGAA 953
|||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1042 TTACTACATGTCTCTTATCAAGAAATATTTCCCGGAAAA-CTTGAGGTGGTGAA 1094
> AT4G26255.1 | Symbols: | other RNA | chr4:13293941-13296465
FORWARD LENGTH=1222
Length=1222
Score = 69.4 bits (37), Expect = 7e-11
Identities = 54/62 (87%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 517 TGGTGAC--ACATTCCCTGTTGGGTGTGCATTTGATGAATCTAACGTACACCACAAGTAT 574
||||||| | ||||| |||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 528 TGGTGACATAGATTCCTTGTTAGGTGTGCATTTGATGAATCTAACGTACAACACGGGTAT 587
Query 575 TT 576
||
Sbjct 588 TT 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5