BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495760
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56700.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 994 0.0
AT5G38590.2 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 135 6e-31
AT5G38565.1 | Symbols: | F-box/FBD-like domains containing pro... 121 2e-26
AT4G15060.1 | Symbols: | CONTAINS InterPro DOMAIN/s: FBD (Inte... 100 2e-20
> AT5G56700.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr5:22941794-22943378 FORWARD LENGTH=1166
Length=1166
Score = 994 bits (538), Expect = 0.0
Identities = 889/1050 (85%), Gaps = 57/1050 (5%)
Strand=Plus/Plus
Query 1 AGGGTCGGAAAACCCCAAGTTTGTCTTGGGTCCTT-AATTGATATGGCTAAAATCAGTGA 59
|||||||||||||||||| ||||||||| || ||| | |||||||||||||||||||||
Sbjct 42 AGGGTCGGAAAACCCCAAATTTGTCTTGAGT-CTTCGAGTGATATGGCTAAAATCAGTGA 100
Query 60 CTTGTCTGATGAATTGCTGGTGAAGATATTATCGTTTCTTCCAACAAAAGTTGCTGTATC 119
||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||
Sbjct 101 CTTGTCTGATGAATTACTGGTGAAGATATTATCGTTTCTTCCAACAAAAGAAGCAGTATC 160
Query 120 AACTAGTGTTTGTCTAAACAATGGGAGTTTCTTTGGATGTGGTTG-CCTAAACTCGAGTT 178
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||
Sbjct 161 AACTAGTGTTTGTCGAAACAATGGGAGTTTCTTTGGATGTGGTTGTCC-AAACTCGAGTT 219
Query 179 CTACTTTAGTGACATGGGAGTTTCTTTGGATGTGGATGTAAAATCGTGGGCTGGAATTGC 238
|||||||| | | || ||||| | || |||||||||| | |||||||
Sbjct 220 CTACTTTA--G---T--GA-------TGGAT-T---TG--AAATCGTGGGTTAGAATTGC 259
Query 239 AGTTTCTCGCTGCGTGCGTGAGCTAAGTATCTA-TTTTCATTTCTATAAAGA-ACCTGGT 296
|||||||||||| |||||||||||||| ||| | ||| || | || | || | ||| |
Sbjct 260 AGTTTCTCGCTGTGTGCGTGAGCTAAGCATC-AGTTTACA--T-GAT-ACGACAGCTGCT 314
Query 297 TTGTTATTGCCCAGTAGTTTGTATACCTGCAAATCGCTTGTGACTTTGAAACTTGAAGGC 356
| | ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 315 GTATCATTGCCCAGTAGTTTGTATACCTGCAAATCGCTCGTGACTTTGAAACTTTACGG- 373
Query 357 T-ATAAGATTCTTGTGGATGTTCCTCCAACGGT-TTGTCTCCCTTCCTTGAAAACTTTGC 414
| | ||| ||||| |||||||||||| |||||| || ||||||||||||||||||||||
Sbjct 374 TAAGAAGGTTCTTTTGGATGTTCCTCGAACGGTATT-CCTCCCTTCCTTGAAAACTTTGC 432
Query 415 GACTTAG-ATGGGTGAAATATTTGA-AGGAAGATTCTCTTGGACTGCTTCTATCGC-ATT 471
|||| | | | ||| ||| | | | |||||||||||| | ||||||||||| | | |
Sbjct 433 AACTT-GAACGTTTGAGATA-CTCAGATGAAGATTCTCTTCGCCTGCTTCTATC-CTACT 489
Query 472 GCCCTGTTCTGGAAGATCTGAGTATTGAAC--GATGTCATAATGACAATGTGAGAGCGTT 529
||||||||||||||||||||||||||| || || | | | |||||||| ||||||||||
Sbjct 490 GCCCTGTTCTGGAAGATCTGAGTATTGTACGAGAAGAC-T-ATGACAATTTGAGAGCGTT 547
Query 530 AGTTGTTATTGTCTCGTCCTTGCAGCGTTTATCTTTAATTATAGACAGTGG--A-TGTTC 586
||||||||||||| | ||||||||||||||||| || | | | || ||| | |||||
Sbjct 548 AGTTGTTATTGTCCCATCCTTGCAGCGTTTATCCTT-A-GAGATAC-CTGGTAATTGTTC 604
Query 587 TTCTGATGCGTATGTGATAGTTACCCCTTATTTGAAGTATTTCAAAGTTGTGGATCCTAG 646
|||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 605 TTCTGATGGGTATGTGATAGTTACTCCTTCTTTGAAGTATTTCAAAGTTGTGGATTATAG 664
Query 647 AGATAGTCTCTCCTATTTGATTGAGCATATGCCAGAGCTGGAAGAGGCAGATATCAATGT 706
||| ||| | ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 665 AGAAAGTATGTCCTATTTGATTGAGCAAATGCCAGAGCTGGAAGAGGCAGATATTGTTGT 724
Query 707 TAAGCAAAATATCGAGAAGCTTCTCGTATCAATCACCTCTGTCAAACGTCTTTCAT-TAC 765
| ||| || |||||||||||||| |||| | || | | ||||||| ||||| | |||
Sbjct 725 TCTGCAGTATCCCGAGAAGCTTCTCGAATCAGTTACATTTTTCAAACGCCTTTC-TATAC 783
Query 766 AAGTAGGCTTCAGGA-TTAACAAAGAGACTGTGTATCGTAATGGTATTGTCTTCAATCGG 824
||| |||| | || | | |||||||||||||||| |||| || ||||||||||||
Sbjct 784 GCGTAATATTCAACACTT-ATACAGAGACTGTGTATCGTGATGGAATAGTCTTCAATCGG 842
Query 825 CTTGAAAATTTGAAGCTATGTATATGCAGTGATGATTGGTCAAAGTTACTTGTCCAGTTG 884
|||||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||
Sbjct 843 CTTGAAAATTTGAAGCTATGTATATGCAATGGTGATTGGTCCAAGTTACTTATCCAGTTT 902
Query 885 CTCAAAGATTCTCCTAACCTGCGAGTCCTCAATCTCGTCGTTGATGATTATCCGTCAATT 944
|||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 903 CTCAAAGACTCACCTAACCTGCGAGTCCTCAATCTCCTCGTTGATGATTATCCGTCAAGT 962
Query 945 TATGGGGAAT-ATGAACCGGTTCGCTGGGAAAATAATCAGAGCTCCGTCCCTAAATGTTT 1003
| ||||| || ||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 963 T-TGGGGGATTATGAACCGGTTCGCTGGAAAAATAATAAGAGCTCCGTCCCGAAATGTTT 1021
Query 1004 GTTGAACAGTCTTGAAACTTTCGAGTTTGC 1033
|||| | |||||||||||||| ||||||||
Sbjct 1022 GTTGGAGAGTCTTGAAACTTTTGAGTTTGC 1051
> AT5G38590.2 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:15451945-15453897 REVERSE LENGTH=1624
Length=1624
Score = 135 bits (73), Expect = 6e-31
Identities = 120/141 (85%), Gaps = 9/141 (6%)
Strand=Plus/Plus
Query 40 GATATGG-CTAAAATCAGT-GACTTGTCTGATGAATTGCTGGTGAAGATATTATCGTTTC 97
||||||| | ||||||| | || ||| ||||||| |||||||||||||| ||||||| |
Sbjct 268 GATATGGAC-AAAATCAATGGA-TTGCCTGATGATTTGCTGGTGAAGATTTTATCGTATG 325
Query 98 TTCCAAC-AAAAGTTGCTGTATCAACTAG--TGTTTGTCTAAACAATGGGAGTTTCTTTG 154
||||||| | | |||||||||| ||||| | ||||||||| | |||||||||||||||
Sbjct 326 TTCCAACGGATA-TTGCTGTATCCACTAGCAT-TTTGTCTAAGCGATGGGAGTTTCTTTG 383
Query 155 GATGTGGTTGCCTAAACTCGA 175
||||||||||||||| |||||
Sbjct 384 GATGTGGTTGCCTAATCTCGA 404
> AT5G38565.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:15444310-15446009 REVERSE LENGTH=1311
Length=1311
Score = 121 bits (65), Expect = 2e-26
Identities = 99/115 (86%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 67 GATGAAT-TGCTGGTGAAGATATTATCGTTTCTTCCAACAAAAGTTGCTGTATCAACTAG 125
|||| || ||||||||||||| ||||||||| |||| ||||||||||||||||| |||
Sbjct 25 GATG-ATGTGCTGGTGAAGATTTTATCGTTTGTTCCGACAAAAGTTGCTGTATCCACTTC 83
Query 126 TGTTT-GTCTAAACAATGGGAGTTTCTTTGGATGTGGTTGCCTAAACTCGAGTTC 179
||| |||||| | |||||||||||||||||||||||||||| |||||| |||
Sbjct 84 CATTTTGTCTAAGCGTTGGGAGTTTCTTTGGATGTGGTTGCCTAGACTCGATTTC 138
> AT4G15060.1 | Symbols: | CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596),
F-box domain, Skp2-like (InterPro:IPR022364),
FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101);
BEST Arabidopsis thaliana protein match
is: FBD, F-box and Leucine Rich Repeat domains containing protein
(TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:8599035-8601761 FORWARD
LENGTH=1620
Length=1620
Score = 100 bits (54), Expect = 2e-20
Identities = 101/122 (83%), Gaps = 9/122 (7%)
Strand=Plus/Plus
Query 61 TTGTCTGATGAATTGCTGGTGAAGATA-TTATCGTTTCTTCCAAC-AAAAGTTGCTGT-A 117
||| ||||||| ||||| |||||| || | | |||||||||||| |||| ||||||| |
Sbjct 529 TTGCCTGATGACTTGCTCGTGAAGGTACTGCT-GTTTCTTCCAACTAAAA-TTGCTGTAA 586
Query 118 TCAACTAGT-GTTTGTCTAAA-CAATGGGAGTTTCTTTGGATGTGGTTGCCTAAACTCGA 175
| || ||| ||| || ||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 587 GC-ACAAGTATTTTATC-AAAGCGATGGGAGTTTCTTTGGATGTGGTTGCCTAAACTTGA 644
Query 176 GT 177
||
Sbjct 645 GT 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5