BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495762

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56710.1 | Symbols:  | Ribosomal protein L31e family protein...   900    0.0  


> AT5G56710.1 | Symbols:  | Ribosomal protein L31e family protein 
| chr5:22943831-22944971 REVERSE LENGTH=606
Length=606

 Score =  900 bits (487),  Expect = 0.0
 Identities = 530/550 (96%), Gaps = 5/550 (1%)
 Strand=Plus/Plus

Query  1    CCCCTTTCTGTCTCTCGACGTTCTTCAATCCAAAGGTACAGAGTTTgaagaagtaagtaa  60
            ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
Sbjct  1    CCCCTTTCTGTCTCTCGGCGTTCTTCAATCGAAAGGTAAAGAGTTTGAAGAAGTAAGTCA  60

Query  61   cagagaaagagaaagatgtctgagaaaaagggaaggaaagaggaagTGGTGACCAGAGAG  120
            ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct  61   CAGAGAAAGAG-AAGATGTCTGAGAAAAAGGGAAGGAAAGAGGAAGTGATTACCAGAGAG  119

Query  121  TACACCATTAACCTCCACAGACGCCTTCACAAATGTACCTTTAAGAAGAAGGCACC-AAA  179
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  120  TACACCATTAACCTCCACAGACGCCTTCACAAATGCACCTTTAAGAAGAAGGCACCGAAA  179

Query  180  TGCCATTAAGGAGATCAGGAAGTTTGCAGAGAAAGCTATGGGGACTAAGGACGTTAGGGT  239
             ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  180  -GCCATCAAGGAAATCAGGAAGTTCGCAGAGAAAGCTATGGGGACTAAGGACGTTAGGGT  238

Query  240  AGACGTGAAATTGAACAAGCAAATCTGGAGCAAGGGAATCAGAGGTCCACCAAGGAGGAT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  AGACGTGAAATTGAACAAGCAAATCTGGAGCAAGGGAATCAGAGGTCCACCAAGGAGGAT  298

Query  300  CAGGGTTCGTGTTGCACGTAAGAGAAACGACGACGAAGATGCAAAGGAAGAGTTCTTCTC  359
            ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  299  CAGGGTTCGTGTTGCACGTAAGAGAAACGACGATGAAGATGCGAAGGAAGAGTTCTTCTC  358

Query  360  CCTTGTCACTGTTGCTGAAATCCCTGCAGAAGGACTCAGTGGTCTTGGCACAAAGGTCAT  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  CCTTGTCACTGTTGCTGAAATCCCTGCAGAAGGACTCAGTGGTCTTGGCACAAAGGTCAT  418

Query  420  TGAAGAGGAGGATTGAGAGAGTCAGTAGAACAAgttttg-tt-gttttttacttttgttg  477
             ||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||||
Sbjct  419  CGAAGAGGAGGATTAAGAGAATCAGTAGAACAAGTTTTGTTTGGTTTTTTACTTTTGTTG  478

Query  478  ctgtgtttCAATTAAAAGTCTTGACCTTTCACTTTCTTCATTGTAGTGCATCTTGAATTT  537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  479  CTGTGTTTCAATTAAAAGTCTTGACCTTTCACTTTCTTCATTGTAGTGCATCTTGAATTT  538

Query  538  ACTTATGCAG  547
            ||||||||||
Sbjct  539  ACTTATGCAG  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26222224734


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5