BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495765
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56740.1 | Symbols: HAG2, HAC7, HAG02, HAC07 | histone acety... 2438 0.0
> AT5G56740.1 | Symbols: HAG2, HAC7, HAG02, HAC07 | histone acetyltransferase
of the GNAT family 2 | chr5:22952796-22955664
REVERSE LENGTH=1704
Length=1704
Score = 2438 bits (1320), Expect = 0.0
Identities = 1425/1476 (97%), Gaps = 5/1476 (0%)
Strand=Plus/Plus
Query 1 GTATCGCTCTCTCCGCATTTCCATTAACCCTCCAATTTTCCCGCCTTTGTCTCACTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTATCGCTCTCTCCGCATTTCCATTAACCCTCCAATTTTCCCGCCTTTGTCTCACTCTCT 60
Query 61 TCCCGCCTT-CACTCGCCGGAGAATCCATGGTTCAGAAGCAGCAAGCCGCCGCCGGTCCG 119
||||||||| |||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 61 TCCCGCCTTGCACTCGCCGGGGACTCCATGGTTCAGAAGCAGCAAGCCTCCGCCGGTCCG 120
Query 120 GTTACCGAGCCTAAAAAGCGTCGCCGTGTCGGATTTTCTCCCGCTGATACTGGTGTCGAG 179
| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GGTACCGAGCCTAAGAAGCGTCGCCGTGTCGGATTTTCTCCCGCCGATACTGGTGTCGAG 180
Query 180 GCTAACGAGTGCATCAAAATATACCTCGTTTCGAGCAAAGAGGAAGTTGATT-CTCCTGA 238
|||||||||||||||||||| || |||||||| ||||||||||||||||||| || ||||
Sbjct 181 GCTAACGAGTGCATCAAAATTTATCTCGTTTCAAGCAAAGAGGAAGTTGATTCCT-CTGA 239
Query 239 TATTTCCTGCGTGAAGCCAGTTGACTTGAATGATTTCTTTGATGGAGATGGCAAGATTTA 298
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TATTTCCAGCGTGAAGCCAGTTGACTTGAATGATTTCTTTGATGGAGATGGCAAGATTTA 299
Query 299 TGGTTACCAAGGTTTGAAGATAAATGTATGGATCAATAGCATCTCATTACATTCATATGC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTTACCAAGGTTTGAAGATAAATGTATGGATCAATAGCATCTCATTACATTCATATGC 359
Query 359 TGATATTACATACCAGAGCACAACCAACGGAGACAAAGGCATCACGGACCTCAAGTCTGC 418
|||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 360 TGATATCACATACCAGAGCACCATTAACGGAGACAAAGGCATCACGGACCTCAAATCTGC 419
Query 419 TTTACAGAACATATTTGCTGAGACCATTGTTGATAACAAGGATGAATTTCTGCAAACCTT 478
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 420 TTTACAGAACATATTTGCTGAGACCATTGTTGATACCAAGGATGAGTTTCTGCAAACCTT 479
Query 479 TTCGACACAGAGTGATTTTATCAGAAATATGGTCTCGAATGGAGAGGTAATGCGTTCTGG 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 480 TTCGACACAGAGAGATTTTATCAGAAATATGGTCTCGAATGGAGAGGTAATGCATGCTGG 539
Query 539 AGCGACAGATGGAAGCAGCAATAATGCTGAAGTGGTTCCTTCAGATCTCCAGGTTATACG 598
||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||
Sbjct 540 AGCAACAGATGGAAGCAGCAAGAATGCTGAAGTGGTTCCTTCTGATCCCCAGGTTATACG 599
Query 599 GATGGAAATTGGTTCTCCAAATGCTGGACTCCTCTATAGCCGATTGGTACCCCTTGTTCT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGGAAATTGGTTCTCCAAATGCTGGACTCCTCTATAGCCGATTGGTACCCCTTGTTCT 659
Query 659 TCTTTTTGTCGATGGCAGCAACCCGATTGATGTCACTGATCCTGACTGGCATTTATATCT 718
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCTTTTTGTCGATGGCAGCAATCCGATTGATGTCACTGATCCTGACTGGCATTTATATCT 719
Query 719 CTTAATCCAAAAGAAAGAGGAAAAAGAAGATCCTTTGTATCGAATTGTGGGATTTACTGC 778
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 720 CTTAATCCAGAAGAAAGAGGAAAAAGAAGATCCTTTGTATCGAATTGTGGGCTTTACCGC 779
Query 779 AATTTATAAATTCTATCGTTATCCTGATAGGCTACGGATGCGACTCAGCCAGATCTTGGT 838
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 780 AATTTATAAGTTCTATCGTTATCCTGACAGGCTGCGGATGCGACTCAGCCAGATCTTGGT 839
Query 839 CTTACCATCCTTCCAAGGAAAAAGACTCGGAAGCTATCTTATGGAGGTAGTAAACAACGT 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 CTTACCATCCTTCCAAGGAAAAGGACTCGGAAGCTATCTTATGGAGGTAGTAAACAACGT 899
Query 899 GGCCATAACAGAAAACGTTTACGATTTGACAGTTGAAGAGCCATCTGAAAAGTTCCAACA 958
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GGCCATAACAGAAAACGTTTACGATTTGACAGTTGAGGAGCCATCTGAAAAGTTCCAACA 959
Query 959 CATCCGCACTTGCATAGACATAAACCGCTTGCGCAGTTTCGATCCAATCAAACCAGACAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CATCCGCACTTGCATAGACATAAACCGCTTGCGCAGTTTCGATCCAATCAAACCAGACAT 1019
Query 1019 TGATTCAGCTGTTCAGACTCTCACAAAAGGAAAGCTATCAAAGAAAGCTCAGATACCTCG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGATTCAGCTGTTCAGACTCTCACAAAAGGAAAGCTATCAAAGAAAGCTCAGATACCTCG 1079
Query 1079 ATTCACCCCGCCTTTGAACTCCATTGAGAAAGTCCGCGAATCTCTGAAGATCAACAAGAA 1138
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATTCACCCCGCCTCTGAACGCCATTGAGAAAGTCCGCGAATCTCTGAAGATCAACAAGAA 1139
Query 1139 ACAGTTTCTCAAATGCTGGGAGATTTTGATATATCTTGCTCTTGATCCTATCGACAAGTA 1198
|||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1140 ACAGTTCCTCAAATGCTGGGAGATTTTGATATACCTTGCTCTTGATCCTATTGACAAGTA 1199
Query 1199 CATGGAAGATTACACATCAGTCATCACGAACCATGTGAGAACCGACATTCTGGGAAAAGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CATGGAAGATTACACATCAGTCATCACGAACCATGTGAGAACCGACATTCTGGGAAAAGA 1259
Query 1259 TATAGAAACTCCAAAGAAACAAGTCGTTGATGTTCCAAGCTCTTTTGAGCCCGAAGCATC 1318
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1260 TATAGAAACTCCAAAGAAACAAGTCGTTGATGTTCCAAGCTCTTTCGAGCCAGAAGCATC 1319
Query 1319 GTTTGTGGTTTTCAAGTCTGCAAATAGG-GAAGAAGCTAATACCAATGTTCAAGTTGATG 1377
|||||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||
Sbjct 1320 GTTTGTGGTTTTCAAGTCTGTAAAC-GGAGAAGAGGCTAATACCAATGTTCAAGTTGATG 1378
Query 1378 AAAACAAACCGGATCAAGAGCAGCAGCTGAAGCAACTGGTTGAGGAAAGGATTCGTGAGA 1437
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1379 AAAACAAACCGGATCAAGAGCAGCAGCTGAAGCAACTTGTTGAGGAAAGGATTCGTGAGA 1438
Query 1438 TCAAGTTGGTTGCTGAGAAAGTCTCTAAGAGTTGTC 1473
||||||||||||||||||||||||| |||||| |||
Sbjct 1439 TCAAGTTGGTTGCTGAGAAAGTCTCCAAGAGTGGTC 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5