BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495766
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56750.1 | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5... 2163 0.0
> AT5G56750.1 | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5:22957877-22960916
FORWARD LENGTH=1460
Length=1460
Score = 2163 bits (1171), Expect = 0.0
Identities = 1312/1378 (95%), Gaps = 17/1378 (1%)
Strand=Plus/Plus
Query 28 ACGACGACGGCGACGGCGGAAGCAGAAGAGCTTTTGTTGCCAATGACGGACTCTTACGGC 87
||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 69 ACGGCGACGGTGACGGC-TAAGCGGAAGAGCTTTTGTTGCCAATGACGGACTCTTACGGC 127
Query 88 GCCGTTTCCGTCGACGTTGGAACAATCTATCTTGGTGGCAAGGAGCATCGTGTTAAAACT 147
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GCCGTCTCCGTCGACGTTGGAACAATCTATCTTGGTGGCAAGGAGCATCGTGTTAAAACT 187
Query 148 GCTAGTGGTGTTGTGTCTGTCATTGTCTATGGAGATC-GGGAAAAGCCAGCATTGATTAC 206
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 188 GCTAGTGGTGTTGTGTCTGTCATTGTCTATGGAGA-CAGAGAAAAGCCAGCATTGATTAC 246
Query 207 TTATCCTGATTTGGCCTTAAACCATATGTCATGCTTCCAAGGATTATTCTTCTGCCCTGA 266
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 247 TTATCCTGATTTAGCCCTAAACCATATGTCATGCTTCCAAGGGTTATTCTTCTGTCCTGA 306
Query 267 AGCAGCTTCATTGCTGCTACATAACTTCTGCATTTATCATATCAGTCCACCTGGGCATGA 326
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 307 AGCAGCTTCATTGCTGCTTCATAACTTCTGCATTTACCATATCAGTCCACCTGGGCATGA 366
Query 327 GTTAGGAGCTGCTCCGATTTGTCCTAATGACTCAGCCCCTTCTGCTGAAAACTTGGCAGA 386
||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 367 GTTAGGAGCTGCTCCAATTTGTCCTAATGATTCAGTCCCTTCTGCTGAAAACTTGGCAGA 426
Query 387 TCAGATCCTTGAAGTTCTCAACTTTTTCGGCCTTGGTGTTGTGATGTGTATGGGAGTGAC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TCAGATCCTTGAAGTTCTCAACTTTTTCGGCCTTGGTGTTGTGATGTGTATGGGAGTGAC 486
Query 447 TGCAGGTGCTTATATCCTCACCTTATTCGCGATGAAACATAGAGAACGGGTTCTCGGTTT 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 487 TGCAGGTGCTTATATCCTCACCTTATTCGCGATGAAACATAGAGAACGGGTTCTTGGTTT 546
Query 507 GATTCTTGTCTCACCGTTATGCAAGGCCCCGTCTTGGTCTGAATGGTTTTACAACAAGGT 566
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 547 GATTCTTGTCTCACCGTTATGCAAGGCGCCGTCTTGGTCTGAATGGTTTTACAACAAGGT 606
Query 567 TATCTCAAACTTGTTATATTACTATGGAATGTGTGGAGTGGTAAAGGAATTTTTGCTTCA 626
|||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 607 TATCACAAACTTGTTATATTATTACGGAATGTGTGGAGTGGTAAAGGAATTTTTGCTTCA 666
Query 627 GAGATATTTTAGTAAGGAAGTCCGTGGTAACGTTGAGATTCCAGAGTCAGATATAGCACA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGATATTTTAGTAAGGAAGTCCGTGGTAACGTTGAGATTCCAGAGTCAGATATAGCACA 726
Query 687 AGCATGCAGAAGACTGCTTGATGAGAGGCAAAGCGTAAACGTTATGCGGTTTCTTGACGC 746
||| |||||||||||||||||||| || ||| || |||||||| |||| |||||||||||
Sbjct 727 AGCTTGCAGAAGACTGCTTGATGAAAGACAAGGCATAAACGTTTTGCGATTTCTTGACGC 786
Query 747 CATTGATCGGAGACCTGACATCTCAAGCGGATTGAAGAAACTAAAATGCAGGACACTTAT 806
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 787 CATTGACCGGAGACCTGACATCTCAAGTGGATTGAAGAAACTAAAATGCAGGACACTTAT 846
Query 807 CTTCATCGGAGATCAATCTCCCTTCTACTCAGAAGCTGTTCACATGGCAGCAACTTTGGA 866
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 CTTCATCGGAGATCAATCTCCTTTCTACTCAGAAGCTGTTCACATGGCAGCAACTTTGGA 906
Query 867 TAGAGGATACTGTGCTTTGGTTGAGGTTCAGGCTTGTGGTTCAATGGTAACAGAGGAGCA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TAGAGGATACTGTGCTTTGGTTGAGGTTCAGGCTTGTGGTTCAATGGTAACAGAGGAGCA 966
Query 927 ACCACATGCAATGTTGATCCCAATGGAATATTTCTTGATGGGTTACGGATTATATAGACC 986
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 967 ACCACATGCAATGTTGATCCCAATGGAATATTTCTTGATGGGTTACGGATTATACAGACC 1026
Query 987 ATCTCTTTTCACAGAGAGCCCTAGAAGTCCTCTTAGCCCTTCTTGTATTTCACCTGAGCT 1046
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1027 ATCTCTTTTCTCCGAGAGCCCTAGAAGTCCACTTAGCCCTTCTTGTATTTCACCTGAGCT 1086
Query 1047 TCTCTCTCCTGAAAGCATGGGATTAAAGCTTAAGCCGATCAAAACCCGAATTTCGGCGGC 1106
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1087 TCTCTCTCCTGAAAGCATGGGATTAAAGCTTAAGCCTATCAAAACCAGAATTTCGGCGGC 1146
Query 1107 TTAAGAGTGTGTGCGCATTACTGATTCATTGGTTCTAATTTTGCTGAGGAGAA-A--TCT 1163
||||| |||||||| | | |||||||||||||||||||||||||||||||||| | |||
Sbjct 1147 TTAAGTGTGTGTGCAC-T-ACTGATTCATTGGTTCTAATTTTGCTGAGGAGAAGAAATCT 1204
Query 1164 TAGGGCTATTGTAGATATAGAACAATCACTAGGGAGATTTGagaagaagaagaagaagaG 1223
||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1205 TAGGGCTTTTGTAGATATAGAACAAT-ACTAGGGAGATTTGAGAAGAAGAAGACGAAGAA 1263
Query 1224 GAGGAGAAATTCAAGCCATCCTT-ATATAACACATTCTTTTGTAGTCAGCCGACACGACA 1282
|| | |||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 1264 GA--A-AAATTCAAGCCA-CCATCATATAACACATTCTTTTGTAGTCAGCCGACACGACA 1319
Query 1283 GTTCTCTTGTTAAGAAGCCACGAAATGTTGTTTATTATTTCATTTTTT-ATACAT--GTA 1339
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1320 GTTCTCTTGTTAAGATGCCACAAAATGTTGTTTATTATTTCATTTTTTTATACATATGTA 1379
Query 1340 AAATGTTCTGTTGTTGTGACATTGTAATAATTGTTTGGTGATGAACTCTGCAGATGCA 1397
|||||||||||| |||||||||||||| |||||||| |||| |||||||||||| |||
Sbjct 1380 AAATGTTCTGTTCTTGTGACATTGTAACAATTGTTTTGTGACGAACTCTGCAGAAGCA 1437
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 AGAGGTTGGGAGAAGAAGAAGAAGAAAA 28
||||||||||||||||||||||||||||
Sbjct 1 AGAGGTTGGGAGAAGAAGAAGAAGAAAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5