BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495767
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56760.1 | Symbols: ATSERAT1;1, SAT5, SAT-52, SERAT1;1 | ser... 1559 0.0
> AT5G56760.1 | Symbols: ATSERAT1;1, SAT5, SAT-52, SERAT1;1 | serine
acetyltransferase 1;1 | chr5:22961309-22962660 REVERSE
LENGTH=1206
Length=1206
Score = 1559 bits (844), Expect = 0.0
Identities = 979/1043 (94%), Gaps = 14/1043 (1%)
Strand=Plus/Plus
Query 1 TTTATAGGTAGGGGGAGATAGAAATCGGAATCTTATCGCCGTCGTTAAGATGCCACCGGC 60
|||||||||||| ||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 32 TTTATAGGTAGGAGGAGATAGAAATC-GAATCTTATCGCCG-CGTTAATATGCCACCGGC 89
Query 61 CGGAGAACTCCGACATCAATCTCCATCGAAGGATAAACAATCTTCCGATACTCAATCC-A 119
||||||||||||||||||||||||||| ||||| |||| |||||||| ||| |||||| |
Sbjct 90 CGGAGAACTCCGACATCAATCTCCATCAAAGGAGAAACTATCTTCCGTTACCCAATCCGA 149
Query 120 CCGAagcagcagcagcggcagcagcagcGATATCTGCGGCAGCTGCAGATGCGGAAGCTG 179
||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 150 -TGAAGCAGAAGCAGC-G--TCAGCAGCGATATCTGCGGCAGCTGCAGATGCGGAAGCTG 205
Query 180 CCGGATTATGGACACAGATCAAAGCGGAAGCTCGCCGTGACGCTGAGGCGGAGCCGGCGT 239
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 206 CCGGATTATGGACACAGATCAAGGCGGAAGCTCGCCGTGATGCTGAGGCGGAGCCAGCTT 265
Query 240 TAGCTAGCTATCTCTATTCGACGATTCTTTCTCATTCGTCTCTTGAGCGATCTATCTCGT 299
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 266 TAGCTAGCTATCTATATTCGACGATTCTTTCTCATTCGTCTCTTGAACGATCTATCTCGT 325
Query 300 TTCATTTAGGAAACAAGCTTTGTTCCTCGACGCTTTTATCCACACTTTTATACGATCTGT 359
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 326 TTCATCTAGGAAACAAGCTTTGTTCCTCAACGCTTTTATCCACACTTTTATACGATCTGT 385
Query 360 TCTTAAACACTTTTTCCTCCGATCCTTCTCTGCGTAACGCCACCGTCGCAGATCTACGCG 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 386 TCTTAAACACTTTTTCCTCCGATCCTTCTCTTCGTAACGCCACCGTCGCAGATCTACGCG 445
Query 420 CTGCTCGTGTTCGTGATCCTGCTTGTATCTCGTTCTCTCATTGCCTCCTCAATTACAAAG 479
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 446 CTGCTCGTGTTCGTGATCCTGCTTGTATCTCGTTCTCTCATTGTCTCCTCAATTACAAAG 505
Query 480 GCTTCTTAGCTATTCAGGCGCATCGTGTTTCACACAAGCTATGGACGCAATCACGGAAGC 539
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 506 GCTTCTTAGCTATTCAGGCGCATCGTGTATCACACAAGCTATGGACACAATCACGGAAGC 565
Query 540 CATTAGCATTAGCTCTACACTCAAGAATCTCCGATGTATTCGCGGTGGATATTCATCCAG 599
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 566 CATTAGCATTAGCTCTACACTCAAGAATCTCCGATGTATTCGCTGTTGATATCCATCCAG 625
Query 600 CGGCGAAGATCGGAAAAGGGATACTTCTCGACCACGCAACCGGGGTTGTTA-TCGGAGAA 658
| |||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||
Sbjct 626 CAGCGAAGATCGGAAAAGGGATACTTCTAGACCACGCAACCGGAGTTGT-AGTCGGAGAA 684
Query 659 ACAGCTGTGATTGGGAACAATGTTTCAATCCTTCACCATGTGACACTCGGTGGAACGGGT 718
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 685 ACAGCGGTGATTGGGAACAATGTTTCAATCCTTCACCATGTGACACTAGGTGGAACAGGT 744
Query 719 AAAGCTTGTGGAGATAGACATCCGAAGATTGGTGATGGTTGTTTGATTGGAGCTGGAGCG 778
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 745 AAAGCTTGTGGAGATAGACATCCGAAGATCGGTGACGGTTGTTTGATTGGAGCTGGAGCG 804
Query 779 ACTATTCTTGGAAATGTGAAGATTGGAGCTGGAGCTAAAGTAGGTGCTGGTTCTGTTGTG 838
|||||||||||||||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct 805 ACTATTCTTGGAAATGTGAAGATTGGTGCAGGTGCTAAAGTAGGAGCTGGTTCTGTTGTG 864
Query 839 CTGATCGACGTGCCTTGTCGAGCTACGGCGGTTGGGAATCCGGCGAGACTCGTTGGAGGA 898
||||| |||||||||||||||| ||| ||||||||||||||||||||||| || |||||
Sbjct 865 CTGATTGACGTGCCTTGTCGAGGTACTGCGGTTGGGAATCCGGCGAGACTTGTCGGAGGG 924
Query 899 AAAGAGAAACCAACTATTCATGATGAGGAATGTCCCGGAGAATCGATGGATCATACTTCA 958
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 925 AAAGAGAAGCCAACGATTCATGATGAGGAATGTCCTGGAGAATCGATGGATCATACTTCA 984
Query 959 TTCATCTCGGAATGGTCAGATTACATCATATAAAGTTATTATCATTATCATTGTTTCTGT 1018
||||||||||||||||||||||||||||||||||||| || | || | |||||||||||
Sbjct 985 TTCATCTCGGAATGGTCAGATTACATCATATAAAGTTGTTGTTAT-A--ATTGTTTCTGT 1041
Query 1019 G-TCTTTGAAAGTGAAAACCTTT 1040
| | |||||||||||||| ||||
Sbjct 1042 GGT-TTTGAAAGTGAAAAACTTT 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5