BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495769
Length=2743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56790.1 | Symbols: | Protein kinase superfamily protein | ... 4019 0.0
> AT5G56790.1 | Symbols: | Protein kinase superfamily protein
| chr5:22967939-22971536 FORWARD LENGTH=2826
Length=2826
Score = 4019 bits (2176), Expect = 0.0
Identities = 2598/2788 (93%), Gaps = 83/2788 (3%)
Strand=Plus/Plus
Query 26 TATTTTAATTGTTTGGACCTTAGCTTTTATCTTCTACCAAATTCCTCTGA---T-T---- 77
||||||||||||||||| || |||||||||||||||||||||||||||| | |
Sbjct 49 TATTTTAATTGTTTGGATATTTGCTTTTATCTTCTACCAAATTCCTCTGATTTTGTCGAA 108
Query 78 ----TTAGT---TGAAAATCC-AACACCTGACTTACTTCATCAGCTTTTTGGCCCCACTT 129
||||| ||||||||| || | | |||||||||||||||||||||||||||||||
Sbjct 109 GAAATTAGTAGCTGAAAATCCAAAAATCGGACTTACTTCATCAGCTTTTTGGCCCCACTT 168
Query 130 TACAAAGTATGAGCAAGTTTTTCTTGTTTTCTACAGCAAAGCAATGCTCACACCATTTTC 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TACAAAGTATGAGCAAGTTTTTCTTGTTTTCTACAGCAAAGCAATGCTCACACCATTTTC 228
Query 190 GTGGAGCTTAAAGTCTTCAAAACCTAAC-CAAAGCTTTGAAATTTCTCAGCAAG----A- 243
||||||||||||||||||||| || ||| |||||||||||||||||| ||||| |
Sbjct 229 GTGGAGCTTAAAGTCTTCAAACCCAAACTAAAAGCTTTGAAATTTCTCTGCAAGAAACAG 288
Query 244 A-AGAGAGATCTAGGGATTGGTTATTAagagagagagag-agTA-CACTTCACTATGGGT 300
| ||||||||||||||||||| ||||||||||||||||| || | ||| |||||| |||
Sbjct 289 AGAGAGAGATCTAGGGATTGGCTATTAAGAGAGAGAGAGTAG-AGTACTACACTATTGGT 347
Query 301 TCTTGTGCTGTTGTGTTTTGTGCATCTGTTCTTGTGTCTCTCAGATaaaa-a--a--aT- 354
|| |||||||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct 348 TCCTGTGCTGTTGTGTTTTGTGCATCTGTTCTTGTGTTTCTCAGATAAAATATTAGTTTC 407
Query 355 AG--TTTCAGAGACATTGAA--T------C-T-c--acacacactcacacacGCGTAAAT 400
|| ||||| |||||||||| | | | | |||||||||||||||||||| |||
Sbjct 408 AGTCTTTCAAAGACATTGAATCTCACACACTTACTAACACACACTCACACACGCGTTAAT 467
Query 401 TTCTCAACttttttt-ttttAATATTTCTTTTAGCTTCTGGGGTCACTTGAGAAAGCATC 459
||||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||
Sbjct 468 TTCTCAACTTTTTTTCTATT--TATTTCTTTTAGCTTCTAGGGTCACTTGAGAAAGCATC 525
Query 460 TTGGATTGCGTGATACTTCCACTTTTCTCATTTC---AG-AAAATGGGTTTAGATTGAGT 515
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 526 TTGGATTGCGTGATACTTCCAC-TTTCTCATTTCAGAAGAAAAATGGGTTTAGATTGAGT 584
Query 516 GAAGTGTTAAAAGTGTATGTAAGTAAGGGTTGAAGAAGAAGTTCTTTCAATTTCTGTGTT 575
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 585 GAAGTGTTAAAAGTATATGTAAGCAAGGGTTGAAGAAGAAGTTCTTTCAATTTCTGTATT 644
Query 576 TGTGATTTTCTTGATCTTAG--A-A-AATGAAGCAGAAGGGTTTTAAAGAGAGAGGTGTT 631
|||||||| ||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 645 TGTGATTTCCTTAATCTTAGCTAGAGAATGAAGCAGAAGGGTTTTAAAGAGAGAGGTGTT 704
Query 632 GTAGTGGGGAAGAAAGTAATGGTTGCTGTTAGAGCTTCAAAGGAGATCCCAAAAGCAGCT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GTAGTGGGGAAGAAAGTAATGGTTGCTGTTAGAGCTTCAAAGGAGATCCCAAAAGCAGCT 764
Query 692 CTTTTATGGACTTTAACTCATGTTGTTCAACCTGGAGATCGAATTAGGCTTCTCGTTGTT 751
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 765 CTTTTATGGACTTTAACTCATGTTGTTCAACCTGGAGATCGAATTAGACTTCTTGTTGTT 824
Query 752 GTTCCTTCTAATTATACAAGTAAAAAGATTTGGGGGTTTTCGAGGTTTACCAGTGACTGT 811
|||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 825 GTTCCTTCTAATTACACAAGTAAAAAGATTTGGGGATTTTCGAGGTTCACTAGTGACTGT 884
Query 812 GCTTCAGGTTATGGAAGATTTCTTGCTGGAACGAATTCAGATAGGAAAGATGATATTCAT 871
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 885 GCATCAGGTTATGGAAGATTTCTTGCTGGAACGAATTCGGATAGGAAAGATGATATTCAT 944
Query 872 GAGTCTTGTTCTCAAATGATGTTTCAGTTACACAATGTTTATGATGCAGAGAAGATAAAT 931
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GAGTCATGTTCTCAGATGATGTTTCAGTTACACAATGTTTATGATGCAGAGAAGATAAAT 1004
Query 932 GTCAGAATCAAAATTGTTTTTGCTTCACCTGATGGAGTTATTGCTGCTGAAGCCAAGAAA 991
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1005 GTCAGAATCAAAATTGTTTTTGCTTCACTTGATGGAGTTATTGCTGCTGAAGCTAAGAAA 1064
Query 992 TCCAACTCAAACTGGGTTATTTTAGACAGGGGACTGAAGTATGAGAAAAAATGCTGTATT 1051
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1065 TCCAACTCAAACTGGGTGATTTTAGACAGGGGACTGAAGTATGAGAAGAAATGCTGTATT 1124
Query 1052 GAACAATTGGAGTGCAATCTTGTTGTAATCAAGAAGTCACAGCCAAAGGTTCTTCGTCTC 1111
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1125 GAGCAATTGGAGTGCAATCTTGTAGTAATCAAGAAGTCACAGCCAAAGGTTCTTCGTCTC 1184
Query 1112 AATTTGGTGAAAAATGCAGATACAGAGCATCCAGAAGCTTTATCAAGGTTAGCCTCAAAG 1171
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1185 AATTTGGTGAAAAATGCAGATACAGAGCATCCAGAAGCTATATCAAGGTTAGCTTCAAAG 1244
Query 1172 TCTGTAGAGTCTTGGAGAAGCTCAAGAACTGGAAAAAAGCTGAGGGAACCGTTTGTGACT 1231
||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1245 TCTGTCGAGTCTCGGAGAAGCTCAAGAACTGGAAAAAAGTTGAGGGAACCGTTTGTGACT 1304
Query 1232 CCAGCTAGCAGTCCAGACCAAGAAGTTTCTTCACATACTGATATTGGGACTTCATCAATA 1291
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1305 CCAGCTAGCAGTCCAGACCAAGAAGTTTCTTCACATACTGATATAGGGACTTCATCAATA 1364
Query 1292 TCTAGCTCTGATGCTGGAGCCTCGCCGTTTTTAGCTTCTCGAGTCTTTGAGGGTCTCAAG 1351
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1365 TCTAGCTCTGATGCTGGAGCCTCACCGTTTTTAGCTTCTCGAGTCTTTGAGGGTCTCAAG 1424
Query 1352 GAAGAAAATTTGTGGGTTAATGATGGAAACAAGAGTTTCTTTGAATCTGATTCTGACTCG 1411
|||| ||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1425 AAAGAGAATTTGTGGGTCAATGATGGAAGCAAGAGTTTCTTTGAATCCGATTCTGACTCG 1484
Query 1412 GATGGCGAAAAGTGGAGTCCTTTATCAATGGCCTCTTCATCTTCTCATCCTGTGACAACA 1471
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1485 GATGGTGAAAAGTGGAGTCCTTTATCAATGGCATCCTCATCTTCTCATCCTGTGACAACA 1544
Query 1472 GCTGATATTCTGAGTCCTAGTGGGGATTTATCGAAAGCTCATACCGAAACTCCGAGGAAA 1531
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1545 GCTGATCTTCTGAGTCCTAGTGGGGATTTATCGAAAGCTCATACCGAAACTCCGAGAAAA 1604
Query 1532 TCAAGATTTTCGGTTCTTAGGCTCGCTTTATCGAAGAAAGAACCTGAACCAGGAAAGGAA 1591
||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1605 TCAAGATTTGCGGTTCTTAGGCTCGCTTTATCGAGGAAAGAACCTGAAGCAGGAAAGGAA 1664
Query 1592 ATCCGTAATTCTGATACGTGCTTAAACAAAAGCGTGAGAGAAGTTGTTTCTTTATCCAGA 1651
|| ||||| ||||| | |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1665 ATACGTAAACCTGATTCATGCTTAAACAAAAGCGTGAGGGAAGTGGTTTCTTTATCTAGA 1724
Query 1652 AAACCAGCTCCTGGACCTCCTCCACTATGTACCATATGTCAACACAAGGCACCTAAATTT 1711
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1725 AAGCCAGCTCCTGGACCGCCTCCACTATGTACTATATGTCAACACAAGGCACCTAAATTT 1784
Query 1712 GGAAACCCTCCAAGATGGTTCACTTACGGCGAATTGGAGACTGCAACAAAAGGTTTTTCG 1771
||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 1785 GGAAACCCTCCAAGATGGTTCACTTACAGCGAACTGGAGACCGCAACAAAAGGTTTTTCT 1844
Query 1772 AAAGGGAGTTTCTTGGCTGAAGGTGGGTTTGGTTCAGTTCACCTAGGAACTTTACCAGAT 1831
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1845 AAAGGGAGTTTCTTGGCTGAAGGTGGTTTTGGTTCGGTTCACCTAGGAACTTTACCAGAT 1904
Query 1832 GGTCAAATTATTGCTGTCAAACAATATAAGATTGCTAGTACACAAGGTGACCGAGAATTC 1891
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1905 GGTCAAATTATTGCTGTCAAACAATATAAAATTGCTAGTACACAAGGAGACCGAGAATTC 1964
Query 1892 TGCTCTGAAGTTGAGGTCTTGAGCTGTGCACAACATCGGAATGTTGTGATGCTCATTGGA 1951
|||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct 1965 TGCTCTGAAGTTGAAGTCTTGAGCTGTGCACAGCATCGAAATGTTGTTATGCTTATTGGG 2024
Query 1952 CTATGCGTGGAGGATGGGAAAAGATTACTCGTTTACGAGTATATCTGCAATGGATCATTG 2011
||||| || ||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 2025 CTATGTGTTGAGGATGGGAAAAGATTGCTTGTTTATGAGTATATCTGCAATGGATCATTG 2084
Query 2012 CATTCTCATCTTTATGGTATGGGGAGAGAGCCATTGGGATGGTCAGCACGACAAAAGATT 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 CATTCTCATCTTTATGGTATGGGGAGAGAGCCATTGGGATGGTCAGCACGACAAAAGATT 2144
Query 2072 GCGGTAGGAGCAGCTCGTGGGTTGAGATACCTTCATGAAGAATGCAGAGTCGGTTGCATT 2131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 GCGGTAGGAGCAGCTCGTGGGTTGAGATACCTTCATGAAGAATGCAGAGTCGGTTGCATC 2204
Query 2132 GTGCATAGGGATATGCGTCCTAACAATATTCTGCTCACTCATGATTTTGAGCCTTTGGTT 2191
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2205 GTGCATAGGGATATGCGTCCTAACAATATTCTCCTCACTCATGATTTTGAGCCTTTGGTT 2264
Query 2192 GGAGATTTCGGGCTAGCGAGATGGCAACCAGAAGGAGATAAAGGAGTGGAAACTCGAGTG 2251
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2265 GGAGATTTCGGACTAGCGAGATGGCAACCAGAAGGAGATAAAGGAGTGGAAACCCGAGTG 2324
Query 2252 ATTGGAACTTTCGGGTACTTGGCACCTGAATATGCACAAAGCGGACAGATTACAGAGAAA 2311
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2325 ATTGGAACTTTCGGGTACTTGGCACCTGAATACGCACAAAGCGGACAGATTACAGAGAAA 2384
Query 2312 GCAGATGTTTACTCATTTGGGGTCGTCTTAGTTGAGCTTATCACAGGAAGAAAAGCTATG 2371
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2385 GCAGATGTTTACTCATTTGGGGTAGTCTTAGTTGAGCTTATCACAGGAAGAAAAGCTATG 2444
Query 2372 GACATAAAACGTCCTAAAGGTCAACAATGTCTCACCGAATGGGCAAGACCATTGTTGCAG 2431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 GACATAAAACGTCCTAAAGGTCAACAATGTCTCACCGAATGGGCAAGACCATTGTTGCAG 2504
Query 2432 AAACAAGCCATTAAGGAACTTCTTGATCCGCGTCTAATGAATTGCTACTGTGAGCAAGAA 2491
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2505 AAACAAGCCATTAACGAACTTCTTGATCCGCGTCTAATGAATTGCTACTGTGAGCAAGAA 2564
Query 2492 GTTTACTGTATGGCGCTATGTGCTTACCTCTGCATTCGCCGTGACCCTAACTCGAGGCCA 2551
||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2565 GTTTATTGTATGGCACTATGTGCTTACCTCTGCATTCGCCGTGACCCTAACTCAAGGCCA 2624
Query 2552 CGAATGTCTCAGGTGTTGCGGATGTTAGAAGGAGACGTTGTCATGAATCCAATCTAGAAG 2611
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2625 CGAATGTCTCAGGTGTTGCGGATGTTAGAAGGAGACGTTGTCATGAATCCAATATAGAAG 2684
Query 2612 AAGCTTCACAAG-AAAATT-T-CTTA-----------C--TATTTAGGGTTACTATTACA 2655
|||||||||||| |||||| | |||| | ||||||||||||||||||||
Sbjct 2685 AAGCTTCACAAGGAAAATTCTTCTTAGGGAGTTTGTACACTATTTAGGGTTACTATTACA 2744
Query 2656 GCtttttttCTCTTAAATGAGTTTTGCTTTTTTGTATATGTAAAAGTTTGTTAATGAGAC 2715
||||||| ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 2745 GCTTTTT-------AAATGAGTTTTGCTTTT--GTATATGTAAAAATTTGTTAATGAGAC 2795
Query 2716 AAAGATTCAAGTAATGTTTGTGGAGATT 2743
|||||||||| ||| |||||| ||||||
Sbjct 2796 AAAGATTCAACTAAAGTTTGTTGAGATT 2823
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 AGAGCTACAAATCCAAAATACTTCTTATTT 30
||||||||||||||||||||||||||||||
Sbjct 1 AGAGCTACAAATCCAAAATACTTCTTATTT 30
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136253417188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5