BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495770
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56810.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1882 0.0
> AT5G56810.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:22974520-22975992 FORWARD LENGTH=1308
Length=1308
Score = 1882 bits (1019), Expect = 0.0
Identities = 1202/1290 (93%), Gaps = 14/1290 (1%)
Strand=Plus/Plus
Query 4 GAAGAGGTTACATATCCTGATAGGATCAGCCAGTTACCTAACGATTTGCTTTTTCGAATA 63
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 25 GAAGATGTTACATCTCCTGATAGGATCAGCCAGTTACCTAACGATTTACTTTTTCGAATA 84
Query 64 CTCTCATCAATCCCGGTAAGCGATGCAATGTCCACAAGTTTATTGTCTAAACGATGGAAA 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 85 CTCTCATTAATCCCGGTAAGCGATGCAATGTCCACAAGTTTATTGTCTAAACGTTGGAAA 144
Query 124 TCTGTGTGGAAGATGTTGCCAAGGCTTGTATACAATGAAAACCT-TTGTCCCAATATTGG 182
|||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||
Sbjct 145 TCTGTGTGGAAGATGTTGCCAACGCTTGTATACAATGAAAA-CTCTTGTTCCAATATTGG 203
Query 183 TTCTCTTGGATTTGACCAATTTTGTGGCAGATCCTTGTC-CTTACATGAAGCTCCACTTC 241
||||||||||||||||||||||||||| || |||||| | |||||||||||||||||||
Sbjct 204 TTCTCTTGGATTTGACCAATTTTGTGGTAGGTCCTTG-CAATTACATGAAGCTCCACTTC 262
Query 242 TCAAAACCCTAAATCTCA-AACTTAGGAACCAATCTGATTCTTTAGATTC-TCTCATATT 299
|||||||||||| || | |||||||||| ||| ||||||| |||||||| || ||||||
Sbjct 263 TCAAAACCCTAACCCT-AGAACTTAGGAAGCAAACTGATTCCTTAGATTCTTC-CATATT 320
Query 300 TCCAAACATACGTTCCACACTCCTTGAGA-TGTCAATCAAATCTACTGATTATCCTTG-T 357
||||||||| | ||| || |||||||| | | |||||||||||||||| |||||| || |
Sbjct 321 TCCAAACATTCATTCTACTCTCCTTGA-ATTCTCAATCAAATCTACTGGTTATCC-TGTT 378
Query 358 TATTACAGTACTATCAGTTTCCCAAACAACCTTGATGTCTTCCAAACATTAGTTGTCTTG 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 379 TATTACAGTACTATCAGTTTCCCAAACAACCTTGATGTCTTCCAAACACTAGTTGTCTTG 438
Query 418 AAACTCCAAGGCAATATTACTCTTGATGTTGTTGATTCTCCGGTTTGTTTCCAGTCTTTG 477
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 439 AAACTCCAAGGCAATATTTGTCTTGATGTTGTTGATTCTCCGGTTTGTTTCCAGTCCTTG 498
Query 478 AAGAGTTTGTACCTCAAATGTGTGAATTTCAAGAATGAAGAATCTTTTTCCAAACTTTTA 537
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 499 AAGAGTTTGTACCTCACATGTGTGAATTTCGAGAATGAAGAATCTTTTTCCAAACTTTTA 558
Query 538 TCAGCCTGTCCTGTTCTTGAAGACCTCTTCCTCCAAAGACTTTGCAGTGTCGGTCGTTTT 597
|| || |||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 559 TCTGCTTGTCCTGTTCTTGAAGACCTCTTCCTCCAAAGACTTTGTAGTGTGGGGCGTTTT 618
Query 598 TTGTTCACCATATCAGTCCCTTCTCTACAGAGATTAACCTACAATAAAGAACAATG-CTA 656
||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 619 TTGTTTTCCATATCAGTCCCTTCTCTACAGAGATTAACCTACACTAAAGAACAA-GCCTA 677
Query 657 TTATTCTAACGATGAAGCCATACTCGAGATTACTGCTCCTTCTTTGAAGTACTTAAATAT 716
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 678 TTATTCTAACGATGAAGCAATACTCGAGATTACCGCTCCTTCTTTGAAGCACTTAAACAT 737
Query 717 CTTCGATCGCGTAGGTGTTTTCAGTTTTATTGAAGATATGGATAAGTTGGTGGAGGCAAG 776
||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||
Sbjct 738 CTTCGATCGCGTAGGTGTTTTCAGTTTTATTGAGGATATGCCTAAATTGGTGGAAGCAAG 797
Query 777 TGTTAAAGTTAATCTGTCAAAGAATGAGAAGCTTCCGAAAGTTCTTACTTCGGTTGAGCA 836
||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 798 TGTTAGAGTTAAACTGTCAAAGAATGAGAAGCTTCCGAAAGTTCTTACTTCAGTTGAGCA 857
Query 837 TCTTTCGCTAGATTTATATCCTTCAATGGTTTTTCACCTTAATGATAGATTCATCTCCAA 896
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 858 TCTTTCGCTAGATCTATATCCTTCAATGGTTTTTCACCTTGATGATAGATTCATCTCCAA 917
Query 897 GCAACTTCTTCATCTGGAATTAGACATTTACGACAACTTTCGGTCAAATCTACTTCTGAG 956
||| |||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 918 GCAGCTTCTTCATCTGAAATTAGACATTTACGACAACTTTCAGTCGAATCTTCTTCTGAG 977
Query 957 TTTTTTGAAAGATTTACCTAAGCTACAATCTCTCAAGCTCAACCACACACATCCCAACTA 1016
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 978 TTTGTTGAAAGATTTACCTAATCTACAATCTCTCAAGCTCAACCATTCACATCCCAGCTA 1037
Query 1017 TACTGTCGAGGATCAACCGTCTTCAGTCTCTGGACCGAGCTCTGTTCCTGAATGCTTGAG 1076
|| |||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct 1038 TAATGTCGAAGATCAACCGTGTTCAGTCTCTGAACCAAGCTCTGTTCCTGAATGCTTGAG 1097
Query 1077 CTTCCATCTCGAGACTTTTCAATGGATAGGCTACGCAGGAACAATTGAAGAGACAGAAGC 1136
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 1098 CTTCCATCTCGAGACTTTTCAATGGATAGGCTACGCAGGAACATTTGAAGAGATAGCAGC 1157
Query 1137 TGCGGTTTACGTTCTGAAAAACGCTCGTTGTTTGAAGAATGCTACAATATCTCTGCATTC 1196
||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 1158 TGCGGTTTACGTTCTGAAAAACGCTCGTTGTTTAAAGAATGCTACAATCTCTCTGTATTC 1217
Query 1197 AAGGGGCACAGAGAATGATCTGATGATGATTAAGGAGTTGGAATCTATGTCTAAAGCTTC 1256
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1218 AAGGGGCACAGAGAATGGTTTGATGATGATTAAGGAGTTGGAATCTATGTCTAAAGGTTC 1277
Query 1257 AAACATGTGTCAGCTTTTAGTTAAATTTTA 1286
|| |||||||||||||||||||||||||||
Sbjct 1278 AATCATGTGTCAGCTTTTAGTTAAATTTTA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5