BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495771
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56820.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1467 0.0
> AT5G56820.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:22976334-22977838 FORWARD LENGTH=1308
Length=1308
Score = 1467 bits (794), Expect = 0.0
Identities = 1154/1319 (87%), Gaps = 59/1319 (4%)
Strand=Plus/Plus
Query 1 ATGAATGCTCCAAGATTGGGAAGTGAAGAGTTTTCATATTCGGATAGGATTAGTGACTTA 60
||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1 ATGAAAGCTCCAAGATTGGGAAGTGAAGAGGTTTCATATTCGGATAGGATTAGTTACTTA 60
Query 61 CCTGATGATTTGCTTTTACGAATACTCTCATTCATTCCTACAAGCGATGCCATCTCCACA 120
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 61 CCTGATGATTTGCTTTTACGAATACTCTCATTCATTCATACAAGCGATGCTATCTCCACA 120
Query 121 AGCTTATTATCTAAACGATGGAAGTTTGTGTGGAAGATGATGCCAACACTTGATCTTGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTTATTATCTAAACGATGGAAGTTTGTGTGGAAGATGATGCCAACACTTGATCTTGAT 180
Query 181 GAAGACTCTTGTCGCAATCTTGGCTCCCTTAGATTTGACGAAGTTTGTTGCA-GCTTCTT 239
||||| |||||||||||| ||||| ||||| |||||||||||| |||||||| | |||||
Sbjct 181 GAAGATTCTTGTCGCAATATTGGCACCCTTCGATTTGACGAAGGTTGTTGCATG-TTCTT 239
Query 240 GCCATCACATGAAGCTCGGGTTCTTACGAGTTTGAATCTCAAACTTATGAAAAAATCTAA 299
| |||||||||||||| ||||||||| |||||||||||||||||||||| | ||| |
Sbjct 240 GAAATCACATGAAGCTCCGGTTCTTACAAGTTTGAATCTCAAACTTATGACACCTTCTCA 299
Query 300 TGATATAGACCGTCTGTTATCAAATATTCAATCTATTCTTCATGAGCTCACAATCACTTC 359
||||||||| ||||| |||||||||||| || | |||||||||||| |||||||||||||
Sbjct 300 TGATATAGATCGTCTTTTATCAAATATTAAACCCATTCTTCATGAGATCACAATCACTTC 359
Query 360 TTATAGTTGGAGT-CGTATCAGCTTCCCAAGGAATCTTAATGTCTGCCAGACACTTGTCG 418
|||||| | ||| | |||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 360 TTATAGGTACAGTAC-TATCAGATTCCCAAGGAATCTTAACGTCTGCCAAACACTTGTCG 418
Query 419 TGATGAAACTCCAAGACAAGGTTCTTGTGGATGTTT-TTTCCCCGCCGGTTTGTTTCCGG 477
|||||||||||||||||||||||||||||||||||| |||||| | | |||||||||||
Sbjct 419 TGATGAAACTCCAAGACAAGGTTCTTGTGGATGTTTCTTTCCC-G--G-TTTGTTTCCGG 474
Query 478 TCCTTGAAAACTTTGCACCTCACACGCGTGAAATACTCTTGCCAAGAATCTTTCAGAAGA 537
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 475 TCCTTGAAAAGTTTGCACCTCACACGCGTGAAATACTCTTGCCGAGAATCTTTCACCACA 534
Query 538 CTTTTATCAGTTTGTCCTGTTCTTGAAGATCTATATCTCTTCATAGATAGAGTTCGCTAT 597
|||||||||| ||||||||||||||||||| || |||||||||| | ||||||| ||||
Sbjct 535 CTTTTATCAGCTTGTCCTGTTCTTGAAGATTTAGATCTCTTCATTGGCAGAGTTCACTAT 594
Query 598 GAATGTCTTC-CTTCGTTCACCATATTTGTCCCTTCCTTACAGAGATTATCTATATGTGA 656
|| |||||| || |||| || |||| || || ||||||||||||||||||||||||||
Sbjct 595 GACTGTCTTAACT-CGTTTACTATATGGGTGCCGTCCTTACAGAGATTATCTATATGTGA 653
Query 657 AGAGTCATATAGCA---G--G-ACGTTATTTGAAATAAGTGTTCCTTCTTTGATATACTT 710
|||||||| || | | ||| ||||||||||||||||||||||||| ||||||
Sbjct 654 CGAGTCATACCGCTTTCGTAGCACGACGTTTGAAATAAGTGTTCCTTCTTTGAAATACTT 713
Query 711 AAAAATCGCG-GCTC-GCTATGGTTGGTTTAAGTTTTTTGAGGATATGCCTAAGTTAGTT 768
|||||||||| | || | | |||| ||||||||| ||||||| |||||||| ||||||
Sbjct 714 AAAAATCGCGTG-TCAGG-ACAGTTGCTTTAAGTTTGTTGAGGACATGCCTAACTTAGTT 771
Query 769 GAGGCACATGTTGAAG-TAAATCCATATGAAATTAATAACCTTCT-GAGGTGTCTCACTT 826
|||||||||||||||| ||| || | |||||| ||| ||||| || ||| | |||||| |
Sbjct 772 GAGGCACATGTTGAAGCTAA-TCAACATGAAACTAAGAACCT-CTTGAGATTTCTCACCT 829
Query 827 CTGTTGAACGTCTTTCGATTGAATTTTTCTCTTCAATGGATATAGTTCTTACCGATAGAA 886
| |||||||||||| | || | | | | | || |||||||||||||
Sbjct 830 CAGTTGAACGTCTTAAG---GA-T----C-C---A--G-AT------CTTACCGATAGAA 868
Query 887 TCTTCCACCGGCTTCTTTATCTTGAGCTGCATATGCACAACGGACTTCA--GGAGAATCA 944
||||||||| |||||||||||||||||||||| ||||||| |||| || || || ||
Sbjct 869 TCTTCCACCAGCTTCTTTATCTTGAGCTGCATTTGCACAAAAGACT-CAATGGGGA-TCG 926
Query 945 AATTCTGAGTTTGCTCAAACATTCCCCTAATCTACAAGCTCTCAAGCTCAACGAGAAACC 1004
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 927 AATTCTGAGTTTGCTCAAACATTCTCCTAATCTACAAACTCTCAAGCTCAACGAGAAACC 986
Query 1005 TTCGTGTTCTGTCAGGGATCAACCGAG-AT-T-TGTTCCTAAACCGAATTCTGTTCCTGA 1061
|| ||||| ||| ||||||||||| || | ||||| |||||||||||||||||||||
Sbjct 987 TTTACGTTCTATCAAGGATCAACCGAATATATCTGTTCGTAAACCGAATTCTGTTCCTGA 1046
Query 1062 GTGCTTGACCTTCCATCTTGAAACTCTTGAGTGGCGAGGCTATGCAGGAAGACCGGAAGA 1121
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1047 GTGCTTAACCTTCCATCTTGAAACTCTTGAGTGGCAAGGCTATGCAGGAAGACCGGAAGA 1106
Query 1122 TAAAGAAATTGCTGTGTACATTTTGGGAAACGCTCTTCGTCTAAACACGGCTAAGATCTC 1181
||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1107 TAAAGAAATCGCTGTTTACATTTTGGGAAACGCTCTTCGTCTCAACACGGCTACGATCTC 1166
Query 1182 TCGATATTTCTCCTCCAGCCGCTTCCGTCCCCGCCACCACCAGAAGAAGGATCGAAAAAT 1241
|||||||||| ||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1167 TCGATATTTCAGCTCCAGCCGCTTCCGTC------ACCACCAGAAGAAGGATCTAAAAAT 1220
Query 1242 CGTGAAGGAGTTAAAATCTTTATCTAAGGCTTCAACTTCATGTCAGCTTGTAATTCAAC 1300
||| |||||||||||||| || ||||||| ||||||||||||||||||||| ||||||
Sbjct 1221 TGTGGAGGAGTTAAAATCTATAACTAAGGCCTCAACTTCATGTCAGCTTGTACTTCAAC 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5