BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495778
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56880.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 754 0.0
> AT5G56880.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:23009098-23009709 REVERSE LENGTH=612
Length=612
Score = 754 bits (408), Expect = 0.0
Identities = 541/602 (90%), Gaps = 22/602 (4%)
Strand=Plus/Plus
Query 1 TGTGTAAGAAGAAAATCACAACAATAATATTGTACGGTCTCTCtttttttttttttGATT 60
|||||||||||||||||||||||||| ||||||||||||||||| | ||||| || |||
Sbjct 7 TGTGTAAGAAGAAAATCACAACAATATTATTGTACGGTCTCTCTCTCATTTTTGTTAATT 66
Query 61 CTTCTTCCTCTCTTGAGTTgagagaaaatggaagaaatgaggaagaaagaagatgagaa- 119
| | || ||| ||||| ||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 67 C-T-TT-CTCACTTGATTTGAGAGAAAATGGAAGAAATGAGGAACAAAGTAGACGAGAAC 123
Query 120 gg--------cg---gcgaaggaagTGACTACGACGACGACGA---TCGTCGCCGGAGAG 165
|| || |||||||||||||| | || |||||||| |||| |||||||||
Sbjct 124 GGAAAAAATACGACCGCGAAGGAAGTGACGAAGAAGACGACGATGCTCGTTGCCGGAGAG 183
Query 166 GACGACGAGTATACGCCAGACGAAATCATGAAG-CTCGTTGAGTCTTCTTCACCGACAAT 224
| ||||||||||| || || ||||||||| || ||||||||||||||||||||||||||
Sbjct 184 TATGACGAGTATACACCGGATGAAATCATG-AGTCTCGTTGAGTCTTCTTCACCGACAAT 242
Query 225 GACGACGACGGATATCGAAGGAACTAACTTTTCTGGCGAGGGGAGTTTCAGAGTGAGGTT 284
|||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 243 GACGACGACGGAGATCGAAGGAACTAACTTTTCCGGCGAGGGGAGTTTTAGAGTGAGGTT 302
Query 285 TATCGACGATCCGTACGCGGTTCCGGTGGTTGTTCAGTCATCTTCCGGTTACATCACGAT 344
||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TATCGACGACCCGTACGCTATGCCGGTGGTTGTTCAGTCGTCTTCCGGTTACATCACGAT 362
Query 345 CAACGTCAATGAAGAGAGCTGTGGTCCGTCGTTTTCAGACAGCGACTCTTCCGTCATGGC 404
||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 363 CAATGTCAACGAAGAAAGCTGTGGTCCGTCCTTTTCAGACAGCGACTCTTCCGTCATGGC 422
Query 405 AAGCGTCGACGCAAGTGGGT-TATTCGGTTGCTGTTTCGAATACGGAGGCGAGAAAGGCG 463
|||||||||||| ||| ||| | |||||||||||||||||||||||| |||||||||||
Sbjct 423 AAGCGTCGACGCTAGT-GGTCTGTTCGGTTGCTGTTTCGAATACGGAAACGAGAAAGGCG 481
Query 464 GCGCGTGGAGTACAAACGAGGTGAGAGCGAGTGAGTATGAGTGGAACGACGATATGTTGG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCGCGTGGAGTACAAACGAGGTGAGAGCGAGTGAGTATGAGTGGAACGACGATATGTTGG 541
Query 524 CGAGGTTTCTAGGTGAAGACTGTGTTTGACCGTTTTGTCGTATTTTGGAGAAAGCATTAT 583
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 542 CGAGGTTTCTAGGCGAAGACTGTGTTTGACCGTTTTGTCGTATTTTCGAGAAAGCATGAT 601
Query 584 AT 585
||
Sbjct 602 AT 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5