BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495790

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57000.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   627    5e-179


> AT5G57000.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 
plant structures; EXPRESSED DURING: 15 growth stages; BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); 
Has 153 Blast hits to 116 proteins in 29 species: 
Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants 
- 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 
| chr5:23063752-23065350 REVERSE LENGTH=829
Length=829

 Score =  627 bits (339),  Expect = 5e-179
 Identities = 411/446 (92%), Gaps = 4/446 (1%)
 Strand=Plus/Plus

Query  12   ATTC-CATCGAAAGCAAGAAGAAGATGACGACTGGTGTCAACACAGTTTCTGGTGATGAA  70
            |||| | || ||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct  124  ATTCTCGTCTAAAGCAAGACGAAGATGACGACTGCTGTCAACACAGTTTCTGGTGATGAA  183

Query  71   GATCGTTCGGACAAGAAGATTCATGCTGACATTGATGAGAGCAAAGTCAAAGCGCCAAAC  130
            |||||||||||||| |||||||| | ||| ||||||||||| || |||||||| ||||||
Sbjct  184  GATCGTTCGGACAAAAAGATTCAGGGTGATATTGATGAGAGTAAGGTCAAAGCACCAAAC  243

Query  131  ATGTTTGAACGAGCAAAAGAAGAGTTTGATGCTGTTGTTGGAGCTATTCATCAACGCAAG  190
            ||||| |||||||| ||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct  244  ATGTTCGAACGAGCTAAAGAAGAGCTTGATGCTGTTATCGGAGCTATTCATCAACGCAAG  303

Query  191  AGTTCAAAGGATAAAATGGAATCCAAATCAGAGAAACC---AGATGGAAAGAAAAAACCG  247
            |||||||||||||||||||||| ||||||||| |||||   |||||||||||||||||||
Sbjct  304  AGTTCAAAGGATAAAATGGAATTCAAATCAGATAAACCAGAAGATGGAAAGAAAAAACCG  363

Query  248  AATATGATCAAAAAGGCGAGGGAAGACCTCAAATCTTTATTTCAGAAGGAGAAACCTCCT  307
            |||||| | |||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct  364  AATATGTTGAAAAAGGCGAGGGAAGACCTCAAATCTTTATTCCTGAAGGAAAAACCTCCT  423

Query  308  CGCcatcatcatcatcatcaCAAAGAAACTCATGGAAGGAGTGATGATATCAATGAGAAC  367
            ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  424  CGCCATCTTCATCATCATCACAAAGAAACTCATGGAAGGAGTGATGATATCAGTGAGAAC  483

Query  368  ACTCCAGTTGATGAAGTGAAGGCTCCTAATGTTTTGGAGAGAGCCAAGGAAGAAATCGAG  427
            || || || |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  484  ACACCGGTGGATGAAGTGAAGGCTCCTAATGTTTTGGAGAGAGCCAAGGAAGAAATCGAA  543

Query  428  GCCGTCATCGATACCATCCATCCCAA  453
            ||||||||||| ||||||||| ||||
Sbjct  544  GCCGTCATCGACACCATCCATTCCAA  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5