BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495796
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57040.1 | Symbols: | Lactoylglutathione lyase / glyoxalase... 1074 0.0
> AT5G57040.1 | Symbols: | Lactoylglutathione lyase / glyoxalase
I family protein | chr5:23083898-23085246 REVERSE LENGTH=861
Length=861
Score = 1074 bits (581), Expect = 0.0
Identities = 696/749 (93%), Gaps = 17/749 (2%)
Strand=Plus/Plus
Query 1 TAATCCAAGATTCTCTTCCATGGCTTCTATTTTCAGA-C--CTTCAGCTTCGTTTGATTT 57
||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct 112 TAATCCAAGATTCTCTTCCATGGCTTCTATTTTCAGACCTTCTTCAGCTTCACTTGATTT 171
Query 58 ACGACCAAAGGTTATTTGCAAGAAACTCTCTACGAGAGAGCGGTTTGAGTTCCAGAAGAA 117
|||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||||||
Sbjct 172 ACGACCAAAGGTTATTTGCACGAATCTCTCTACGAAAGAGCGGTTTGAGTTTCAGAAGAA 231
Query 118 GAGTCTGAGGAAAGAAAGGATCAATATTAGGTTTTGTAGCTTGAAGGCTAATAAAGCACA 177
|||| |||||||||||||||||||| ||||||||| |||||||||||| ||| |||||
Sbjct 232 GAGTGTGAGGAAAGAAAGGATCAATGTTAGGTTTTATAGCTTGAAGGC---TAAGGCACA 288
Query 178 AGGA---TCAATTGAAGGGATTAGTGTTGTAGAAGAGAAACAGCTTAACAACAAAACCGA 234
|||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 289 AGGATCGTCAATTGAAGGGATTAGTGTTGTACAAGAGAAAGAGCTTAACAACAAAACCGA 348
Query 235 TTATGGAGTTGTTGGGGTTCATCATGTTGGTCTGCTCTGCGAGAACCTAGAACGGTCACT 294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 349 TTATGGAGTTGTTGGGGTTCATCATGTCGGTCTGCTCTGCGAGAACCTAGAACGGTCACT 408
Query 295 CGAGTTCTACCAGAACATTTTAGGCCTTGAGATCAACGAGGCAAGGCCTCACGATAAGCT 354
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 409 CGAGTTTTACCAGAACATTTTAGGCCTTGAGATCAACGAAGCAAGGCCTCACGACAAGCT 468
Query 355 TCCGTATAGAGGAGCATGGTTATGGGTTGGTTCAGAGATGATTCAT-TTAATGGAGCTTC 413
||| ||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||
Sbjct 469 TCCATATAGAGGAGCATGGTTATGGGTAGGTTCAGAAATGATTCATCTT-ATGGAGCTTC 527
Query 414 CAAATCCAGATCCGTTAACAGGTAGACCCGAGCACGGAGGCCGGGATCGACACGCTTGTA 473
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CAAATCCAGATCCATTAACAGGTAGACCCGAGCACGGAGGCCGGGATCGACACGCTTGTA 587
Query 474 TAGCAATCCGTGATGTTTCAAATCTGAAAGAGATCTTGGACAAAGCTGGGATCG-AGTAT 532
| ||||||||||||||||||||||||||||||||||| ||||||||||| || | | |||
Sbjct 588 TTGCAATCCGTGATGTTTCAAATCTGAAAGAGATCTTAGACAAAGCTGGAATTGCA-TAT 646
Query 533 ACGATGAGTAAGTCAGGGAGGCCAGCGATATTTACTCGTGATCCAGACGCAAACGCTCTG 592
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 ACAATGAGTAAGTCAGGGAGGCCAGCGATATTTACTCGTGATCCAGACGCAAACGCTCTT 706
Query 593 GAGTTCACTCAAGTTTGAGTTGAGTCTATTTGTAGATGAATCCCCTAAACTTTCACTTGA 652
|||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 707 GAGTTCACCCAAGTTTGATTTGAGTCTATTTGTAGATGAATCCTCTAAACTTTCACTTGA 766
Query 653 TTATAAGTTGTAGATGCTCTTCATATAGAACAG-AGAAAAGCAAACCAAA-CTGTTGTCG 710
|||| ||||||| |||||||||||||||||| | | |||||||||||||| | |||| |
Sbjct 767 TTATCAGTTGTAAATGCTCTTCATATAGAACTGCA-AAAAGCAAACCAAATCC-TTGTTG 824
Query 711 ACTTATTATTTAATACCACAATAAATATT 739
||||||||| ||||||||||||| |||||
Sbjct 825 ACTTATTATATAATACCACAATACATATT 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5