BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495797
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57050.1 | Symbols: ABI2, AtABI2 | Protein phosphatase 2C fa... 2298 0.0
> AT5G57050.1 | Symbols: ABI2, AtABI2 | Protein phosphatase 2C
family protein | chr5:23087235-23089627 FORWARD LENGTH=2081
Length=2081
Score = 2298 bits (1244), Expect = 0.0
Identities = 1549/1687 (92%), Gaps = 57/1687 (3%)
Strand=Plus/Plus
Query 71 TTTGGTTCTTTAATTGGCAAA----TCTCTATCTGTTTCATGTGCTAGCTAAGGTTGTCT 126
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 155 TTTGGTTCTTTAATTGACAAATCTCTCTCTATCTGTTTCATGTGCTAGCTAAGGTTGTCT 214
Query 127 TCACTTTCCTCTTATGAGTCATGAGTTTCTTGTCTTCATCTTC-TCTAATAAAGTT---A 182
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 215 TCACTTTCCTCTAATGAGTCATGAGTTTCTTGTCTTCATCTTCATCTAATAAAGTTAACA 274
Query 183 ACACTCTCATCAA--TTT-TTATGTTCAAATCTGTC-GACTTTTCGTT-TTTTCTCTTAC 237
||||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 275 ACACTCTCATCAATTTTTATTATGTTCAAATCTGTCTGACTTTTCGTTCTTTTCTCTTAC 334
Query 238 ACCGAAGCGTTTTAACCATCAAACATCTGTCTCTTTGAA-AC-TAGATATCAAACTTCAA 295
||| |||||||||||| ||| |||||||||||||||||| || |||||||| ||||||||
Sbjct 335 ACCCAAGCGTTTTAACAATCTAACATCTGTCTCTTTGAATACTTAGATATCCAACTTCAA 394
Query 296 TTTGTCTCCTTTCTCTT-CCAAATTTGATTCCTGATTTGGGTCTTTGTTAAAGATCAA-C 353
||| ||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||
Sbjct 395 TTTCTCTCCTTTCTCTTCCCAACTTTGATTCCTGATTTGGGTTTTTGTTAAAGTTCAAGA 454
Query 354 AAG-----tttt-tttttttttCTTCCATTAATGGACGAAGTTTCTCCTGCAGTCGCTGT 407
||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 455 AAGTTCTTTTTTCTTTTTTTTTCCTCCTTTAATGGACGAAGTTTCTCCTGCAGTCGCTGT 514
Query 408 TCCATTCAGACCATTCCCTGAGCCTCACGCCGGAATTAGAGGCTATTGCAACGGCGAATC 467
|||||||||||||||| |||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 515 TCCATTCAGACCATTCACTGACCCTCACGCCGGACTTAGAGGCTATTGCAACGGTGAATC 574
Query 468 TAGGGTTTCGTTACCGGAAAGTTCTTGTCCCGGCGACGGAGCTATGAAAGATTCATCCTT 527
||||||| | |||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 575 TAGGGTTACTTTACCGGAAAGTTCTTGTTCTGGCGACGGAGCTATGAAAGATTCTTCCTT 634
Query 528 TGAGATCAACACGAGGCAAGATTCATTAACATCATCATTATCATCAACGTCGTCATCTGC 587
||||||||| || || ||||||||| | | | | |||||| | ||||||||
Sbjct 635 TGAGATCAATACAAGACAAGATTCA-T----TGA-C---ATCATC-A-----TCATCTGC 679
Query 588 TATGGCAGGTGTACTTGATGTTACCGTGGATATCTCCGCGGGAGATGAAATCAACGGTTC 647
|||||| | | | | |||||||||||||| ||||||||||||||||||||
Sbjct 680 TATGGC------A---G--G-T---GTGGATATCTCCGCCGGAGATGAAATCAACGGTTC 724
Query 648 AGATGAGTTTGATTCGAGATCGACGAATCAGAGTGAGAAGAAAGTACTCAGTAGAACAGA 707
||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 725 AGATGAGTTTGATCCGAGATCGATGAATCAGAGTGAGAAGAAAGTACTTAGTAGAACAGA 784
Query 708 GAGTAGAAGTCTGTTCGAGTTCAAGAGTGTTCCTTTATATGGAGTAACTTCGATTTGTGG 767
||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 785 GAGTAGAAGTCTGTTTGAGTTCAAGTGTGTTCCTTTATATGGAGTGACTTCGATTTGTGG 844
Query 768 AAGACGACCAGAGATGGAAGATTCTGTCTCAACGATTCCTAGATTCCTTCAAGTTTCTTC 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TAGACGACCAGAGATGGAAGATTCTGTCTCAACGATTCCTAGATTCCTTCAAGTTTCTTC 904
Query 828 AAATTCGTTGCTTGATGGTCGAGTCACTAATGGATTTAATCCTCACTTGAGTGCTCACTT 887
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 905 TAGTTCGTTGCTTGATGGTCGAGTCACTAATGGATTTAATCCTCACTTGAGTGCTCATTT 964
Query 888 CTTCGGTGTTTACGATGGCCATGGCGGTTCTCAGGTAGCGAATTATTGTCGTGAGAGGAT 947
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CTTTGGTGTTTACGATGGCCATGGCGGTTCTCAGGTAGCGAATTATTGTCGTGAGAGGAT 1024
Query 948 GCATCTGGCTTTGACGGAGGAGATAGTGAAGGAGAAGCCGGAGTTTTGCGACGGTGACAC 1007
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1025 GCATCTGGCTTTGACGGAGGAGATAGTGAAGGAGAAACCGGAGTTTTGTGACGGTGACAC 1084
Query 1008 GTGGCAAGAGAAGTGGAAGAAGGCTTTGTTCAACTCTTTTATGAGAGTTGACTCCGAGAT 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1085 GTGGCAAGAGAAGTGGAAGAAGGCTTTGTTCAACTCTTTTATGAGAGTTGACTCGGAGAT 1144
Query 1068 TGAACCCGTGGCGCATGCTCCGGAAACAGTTGGGTCCACCTCGGTGGTTGCCGTTGTCTT 1127
|||| | ||||| |||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1145 TGAAACTGTGGCTCATGCTCCGGAAACTGTTGGGTCTACCTCGGTGGTTGCGGTTGTCTT 1204
Query 1128 TCCCACTCACATCTTTGTCGCGAATTGCGGCGACTCCAGGGCGGTTTTGTGTCGCGGCAA 1187
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1205 TCCGACTCACATCTTTGTCGCGAATTGCGGCGACTCTAGGGCGGTTTTGTGTCGCGGCAA 1264
Query 1188 AACGCCACTCGCATTATCCGTTGATCACAAACCGGATAGAGATGATGAAGCAGCGAGGAT 1247
|||||||||||| || || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1265 AACGCCACTCGCGTTGTCGGTTGATCACAAACCGGATAGGGATGATGAAGCGGCGAGGAT 1324
Query 1248 AGAAGCAGCTGGAGGGAAAGTAATCCGGTGGAACGGGGCTCGTGTTTTTGGTGTGCTCGC 1307
|||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1325 AGAAGCTGCCGGTGGGAAAGTAATCCGGTGGAACGGGGCTCGTGTATTTGGTGTTCTCGC 1384
Query 1308 AATGTCAAGATCCATTGGCGATAGGTACCTAAAACCATCAGTAATTCCGGATCCAGAAGT 1367
|||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1385 AATGTCAAGATCCATTGGCGATAGATACCTTAAACCGTCAGTAATTCCGGATCCAGAAGT 1444
Query 1368 GACTTCAGTCCGGCGAGTCAAAGAAGACGACTGTCTCATCTTAGCAAGTGACGGTCTTTG 1427
||||||||| |||||||| |||||||| || |||||||||||||||||||| ||||||||
Sbjct 1445 GACTTCAGTGCGGCGAGTAAAAGAAGATGATTGTCTCATCTTAGCAAGTGATGGTCTTTG 1504
Query 1428 GGATGTAATGACAAACGAAGAAGTGTGTGATTTGGCTCGGAAAAGGATTTTGTTATGGCA 1487
||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 1505 GGATGTAATGACAAACGAAGAAGTGTGCGATTTGGCTCGGAAACGGATTTTACTATGGCA 1564
Query 1488 CAAGAAGAACGCGATGGCCGGAGAGGCTTTGCTTCCGGCCGAGAAAAGAGGAGAAGGAAA 1547
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1565 TAAGAAGAACGCGATGGCCGGAGAGGCTTTGCTTCCGGCGGAGAAAAGAGGAGAAGGAAA 1624
Query 1548 AGATCCTGCAGCAATGTCCGCGGCCGAGTATTTGTCGAAGATGGCTTTGCAAAAAGGTAG 1607
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1625 AGATCCTGCAGCAATGTCCGCGGCAGAGTATTTGTCGAAGATGGCTTTGCAAAAAGGAAG 1684
Query 1608 CAAAGACAATATAAGTGTAGTAGTGGTTGATTTGAAGGGAATAAG-AAAGTTCAAGAGCA 1666
|||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1685 CAAAGACAATATAAGTGTGGTAGTGGTTGATTTGAAGGGAATAAGGAAA-TTCAAGAGCA 1743
Query 1667 AATCCTTGAACTGAAAAAGATGGTTTGGATTaaaaatgaaaaaaa--GTTTTGATGGTGG 1724
|||||||||| ||||||||| |||||||| |||| ||||||||| |||||||||||||
Sbjct 1744 AATCCTTGAATTGAAAAAGAAGGTTTGGAAGAAAAGTGAAAAAAAAAGTTTTGATGGTGG 1803
Query 1725 GTAAAAA 1731
|||||||
Sbjct 1804 GTAAAAA 1810
Score = 169 bits (91), Expect = 1e-40
Identities = 189/230 (82%), Gaps = 32/230 (14%)
Strand=Plus/Plus
Query 1727 AAA-AACAGGTAATAATTACATTGTAATATTAATTTCCTTCTTAAGTTTTATTATTTACT 1785
||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1837 AAACAACAGGTAATAATTACATTGTAATATTAATTTCCTGCTTAAATTTG-TTATTTACT 1895
Query 1786 TTGTTTAGTCTTCCCACCATTGTTTAATCttttt-t-ttt-tt--ACTAACATGAGATA- 1839
|| || ||||||||||||||| |||||||||||| | ||| || |||||||||| |||
Sbjct 1896 TTCTT-AGTCTTCCCACCATTATTTAATCTTTTTATATTTATTTTACTAACATGATATAT 1954
Query 1840 AT---GTA---G------------CTTCCAAACAAAA-GTCCCCTTGTGAAttttttt-A 1879
|| ||| | ||||||||||||| | |||||||| | ||||||| |
Sbjct 1955 ATAATGTACATGGGAATAGTGTAACTTCCAAACAAAAAGCCCCCTTGT-ATTTTTTTTTA 2013
Query 1880 TCTTGGGGGTTAGTTGTAATAAACACTACATTCATCTACGTAAATATTTA 1929
|||||||| ||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2014 TCTTGGGG-TTAGTTGTAATAA-CACTACATTCGTCTACGTAAATATTTA 2061
Score = 117 bits (63), Expect = 4e-25
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1 gagagagagagagagaTCAGAATCTCTAAATGGCTGAAACGAATTGCCCAGAACCCAGGA 60
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 35 GAGGGAGAGAGAGAGTTCAGAATCTCTAAATGGCTGAAACGAATTGCCCAGAATCCAGGA 94
Query 61 AACTCTGATTTT 72
||||||||||||
Sbjct 95 AACTCTGATTTT 106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5