BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495799 Length=755 Score E Sequences producing significant alignments: (Bits) Value AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 928 0.0 AT4G26060.1 | Symbols: | Ribosomal protein L18ae family | chr4... 344 7e-94 > AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23090152-23091988 FORWARD LENGTH=780 Length=780 Score = 928 bits (502), Expect = 0.0 Identities = 627/687 (91%), Gaps = 10/687 (1%) Strand=Plus/Plus Query 73 TTCGTTTAATTACCAGATTCATCTCGACAAATCTTGCACTAAATTCTCTTATCTTCGGGA 132 |||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||| Sbjct 79 TTCGTTTAATCGCCAGATTCATTTCGAAAAATCTTGCACTAGATTCTCTTATCTTCGGGA 138 Query 133 AATCGAAGATCTGGATAATAAGCAAGAGC-TAAAGCATGGACGAAAGTAATTCTAAATTT 191 ||| |||||||||| | |||||||| ||| ||||||||||||| || |||||||||||| Sbjct 139 AATTGAAGATCTGGGTCATAAGCAATAGCTTAAAGCATGGACG-AA--AATTCTAAATTT 195 Query 192 GTATCTGGAAATGGTAGAACCGAGCTGGCTAAATTCATTGTTGATAGGCATGCTAAACTC 251 ||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||| Sbjct 196 GTATCTGGAAACGGTAGAACCGAGCTGGTTAAATTCATTGCTGATAGGCATGCCAAACTC 255 Query 252 ATGAAACAAGCCGCTCGATATTCTTCCGCACTTAAAGATGTTATGGCTCGTGGGAAAAGA 311 |||||||||||| ||||| ||| ||||||| ||||||||| ||||||||||||||||| | Sbjct 256 ATGAAACAAGCCTCTCGACATTATTCCGCAATTAAAGATGCTATGGCTCGTGGGAAAAAA 315 Query 312 AGATATACGCTTGTAAAAGATGTAGACGACATGGAAACAGGAGTATATGACAAACCTCTT 371 |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 316 AGATATACACTTGTAAAAGATGTAGACGACATGGAAACAGGAGCATATGACAAACCTCTT 375 Query 372 CCATGCTTTGGTTGTGGAATCGGATGGTTCTCCTTTCTCTTGGGATTTATGTTTCCACTT 431 ||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||| || Sbjct 376 CCATGCTTTGGTTGTGGAATCGGATGGTTTTCCTTCCTCCTAGGATTTATGTTCCCATTT 435 Query 432 TTGTGGTACTATGCTACATTTCTTTATTTCGGGAACTATTACCGCAAAGATCCTCGAGAA 491 ||||||||||||||| |||| |||||||||||||||||||| || ||||||||| ||||| Sbjct 436 TTGTGGTACTATGCTGCATTCCTTTATTTCGGGAACTATTATCGTAAAGATCCTAGAGAA 495 Query 492 AGAGCCGGTCTTGCTGCTTCAGCAATCACTGCGATGGGATTCTCTCTTGTGTTACTCGTG 551 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| Sbjct 496 AGAGCCGGTCTTGCTGCTTCCGCAATCACTGCGATGGGCTTCTCTCTTGTCTTACTCGTG 555 Query 552 ATTTTTGCTTTCCGGTGGTTTTACTATCCTTAAGATAT-GCAAGTAACTATGT-AACTTA 609 ||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||| | Sbjct 556 ATTTTTGCTTTCCGGTGGTTTTACTATCCTTGAGATAAAG-AAGTAACTATGTTAACT-A 613 Query 610 TCATTCATACCTATAAGTTCCGTGTTCATAAAAGAATAGTCGCGGAAGTTGATGTCTCAT 669 ||||||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||| Sbjct 614 TCATTCATACCTATAAGCTCCGTGTTCATCAAGGAATAGTCTCGGAACTTGATGTCTCAT 673 Query 670 GTACATTCACATAAACCAA-TGAATTTTACTTCGATCCTTTTCTCAAGCTGTGTATGATT 728 ||||||||||||||||||| ||||||| |||||||| |||||||||| ||| ||| || Sbjct 674 GTACATTCACATAAACCAAATGAATTTCACTTCGATATTTTTCTCAAGTTGTATATT-TT 732 Query 729 TTTTGTTGAATTAACGTTTTTCAGTCC 755 ||||||||||| || |||||||||||| Sbjct 733 TTTTGTTGAATGAAAGTTTTTCAGTCC 759 > AT4G26060.1 | Symbols: | Ribosomal protein L18ae family | chr4:13214746-13216461 REVERSE LENGTH=858 Length=858 Score = 344 bits (186), Expect = 7e-94 Identities = 307/364 (84%), Gaps = 14/364 (4%) Strand=Plus/Plus Query 213 GAGCTGGCTAAATTCATTGTTGATAGGCATGCTAAACTCATGAAACAAGCCGCTCGATAT 272 ||||||| ||||| | | | ||||| |||||| ||| ||| || || ||| |||| Sbjct 270 GAGCTGGTTAAATCCGTAGCTGATAAGCATGCCGGTCTCGTGAGACCAGTTGCTAAATAT 329 Query 273 T-CTTCCGCACTTAAAGATGTTATGGCT-CGTGGGAAAAGAAGATATACGCTTGTAAAAG 330 | | || ||| ||||||||| ||||| | |||||||| ||||||||||||||||||||| Sbjct 330 TAC-TCTGCAGTTAAAGATGCTATGG-TGTGTGGGAAAGGAAGATATACGCTTGTAAAAG 387 Query 331 ATGTAGACGACATGGAAACA-GGAGTATATGACAAACCTCTTCCATGCTTTGGTTGTGGA 389 | |||||||| |||||| | ||||| |||||||| |||||||||||||||||||||||| Sbjct 388 ACGTAGACGAGGTGGAAA-ATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGA 446 Query 390 ATCGGATGGTTCTCCTTTCTCTTGGGATTTATGTTTCCACTTT-TG-TGGTACTATGCTA 447 |||||||||||||||||||||||||| ||| |||| || |||| | ||||||||||| | Sbjct 447 ATCGGATGGTTCTCCTTTCTCTTGGGTTTTGTGTT-CC-CTTTCTTATGGTACTATGCAA 504 Query 448 CATTTCTT-TATTTCGGGAACTATTACCGCAAAGATCCTCGAGAAAGAGCCGGTCTTGCT 506 || || || |||||||||||||| |||||||| |||||| ||||||||||||| |||||| Sbjct 505 CACTT-TTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCT 563 Query 507 GCTTCAGCAATCACTGCGATGGGATTCTCTCT-TGTGTTACTCGTGATTTTTGCTTTCCG 565 ||||| ||||||||||||||||||||||| || | || |||| |||||| ||| |||| | Sbjct 564 GCTTCCGCAATCACTGCGATGGGATTCTCCCTCT-TGCTACTAGTGATTGTTGTTTTCTG 622 Query 566 GTGG 569 |||| Sbjct 623 GTGG 626 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36670927310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5