BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495799
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 928 0.0
AT4G26060.1 | Symbols: | Ribosomal protein L18ae family | chr4... 344 7e-94
> AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: defense response to Gram-negative bacterium,
cytolysis; LOCATED IN: integral to membrane; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal
cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana
protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:23090152-23091988 FORWARD LENGTH=780
Length=780
Score = 928 bits (502), Expect = 0.0
Identities = 627/687 (91%), Gaps = 10/687 (1%)
Strand=Plus/Plus
Query 73 TTCGTTTAATTACCAGATTCATCTCGACAAATCTTGCACTAAATTCTCTTATCTTCGGGA 132
|||||||||| |||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 79 TTCGTTTAATCGCCAGATTCATTTCGAAAAATCTTGCACTAGATTCTCTTATCTTCGGGA 138
Query 133 AATCGAAGATCTGGATAATAAGCAAGAGC-TAAAGCATGGACGAAAGTAATTCTAAATTT 191
||| |||||||||| | |||||||| ||| ||||||||||||| || ||||||||||||
Sbjct 139 AATTGAAGATCTGGGTCATAAGCAATAGCTTAAAGCATGGACG-AA--AATTCTAAATTT 195
Query 192 GTATCTGGAAATGGTAGAACCGAGCTGGCTAAATTCATTGTTGATAGGCATGCTAAACTC 251
||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 196 GTATCTGGAAACGGTAGAACCGAGCTGGTTAAATTCATTGCTGATAGGCATGCCAAACTC 255
Query 252 ATGAAACAAGCCGCTCGATATTCTTCCGCACTTAAAGATGTTATGGCTCGTGGGAAAAGA 311
|||||||||||| ||||| ||| ||||||| ||||||||| ||||||||||||||||| |
Sbjct 256 ATGAAACAAGCCTCTCGACATTATTCCGCAATTAAAGATGCTATGGCTCGTGGGAAAAAA 315
Query 312 AGATATACGCTTGTAAAAGATGTAGACGACATGGAAACAGGAGTATATGACAAACCTCTT 371
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 316 AGATATACACTTGTAAAAGATGTAGACGACATGGAAACAGGAGCATATGACAAACCTCTT 375
Query 372 CCATGCTTTGGTTGTGGAATCGGATGGTTCTCCTTTCTCTTGGGATTTATGTTTCCACTT 431
||||||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||| ||
Sbjct 376 CCATGCTTTGGTTGTGGAATCGGATGGTTTTCCTTCCTCCTAGGATTTATGTTCCCATTT 435
Query 432 TTGTGGTACTATGCTACATTTCTTTATTTCGGGAACTATTACCGCAAAGATCCTCGAGAA 491
||||||||||||||| |||| |||||||||||||||||||| || ||||||||| |||||
Sbjct 436 TTGTGGTACTATGCTGCATTCCTTTATTTCGGGAACTATTATCGTAAAGATCCTAGAGAA 495
Query 492 AGAGCCGGTCTTGCTGCTTCAGCAATCACTGCGATGGGATTCTCTCTTGTGTTACTCGTG 551
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 496 AGAGCCGGTCTTGCTGCTTCCGCAATCACTGCGATGGGCTTCTCTCTTGTCTTACTCGTG 555
Query 552 ATTTTTGCTTTCCGGTGGTTTTACTATCCTTAAGATAT-GCAAGTAACTATGT-AACTTA 609
||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||| |
Sbjct 556 ATTTTTGCTTTCCGGTGGTTTTACTATCCTTGAGATAAAG-AAGTAACTATGTTAACT-A 613
Query 610 TCATTCATACCTATAAGTTCCGTGTTCATAAAAGAATAGTCGCGGAAGTTGATGTCTCAT 669
||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||||||||
Sbjct 614 TCATTCATACCTATAAGCTCCGTGTTCATCAAGGAATAGTCTCGGAACTTGATGTCTCAT 673
Query 670 GTACATTCACATAAACCAA-TGAATTTTACTTCGATCCTTTTCTCAAGCTGTGTATGATT 728
||||||||||||||||||| ||||||| |||||||| |||||||||| ||| ||| ||
Sbjct 674 GTACATTCACATAAACCAAATGAATTTCACTTCGATATTTTTCTCAAGTTGTATATT-TT 732
Query 729 TTTTGTTGAATTAACGTTTTTCAGTCC 755
||||||||||| || ||||||||||||
Sbjct 733 TTTTGTTGAATGAAAGTTTTTCAGTCC 759
> AT4G26060.1 | Symbols: | Ribosomal protein L18ae family | chr4:13214746-13216461
REVERSE LENGTH=858
Length=858
Score = 344 bits (186), Expect = 7e-94
Identities = 307/364 (84%), Gaps = 14/364 (4%)
Strand=Plus/Plus
Query 213 GAGCTGGCTAAATTCATTGTTGATAGGCATGCTAAACTCATGAAACAAGCCGCTCGATAT 272
||||||| ||||| | | | ||||| |||||| ||| ||| || || ||| ||||
Sbjct 270 GAGCTGGTTAAATCCGTAGCTGATAAGCATGCCGGTCTCGTGAGACCAGTTGCTAAATAT 329
Query 273 T-CTTCCGCACTTAAAGATGTTATGGCT-CGTGGGAAAAGAAGATATACGCTTGTAAAAG 330
| | || ||| ||||||||| ||||| | |||||||| |||||||||||||||||||||
Sbjct 330 TAC-TCTGCAGTTAAAGATGCTATGG-TGTGTGGGAAAGGAAGATATACGCTTGTAAAAG 387
Query 331 ATGTAGACGACATGGAAACA-GGAGTATATGACAAACCTCTTCCATGCTTTGGTTGTGGA 389
| |||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||
Sbjct 388 ACGTAGACGAGGTGGAAA-ATGGAGTGTATGACAAGCCTCTTCCATGCTTTGGTTGTGGA 446
Query 390 ATCGGATGGTTCTCCTTTCTCTTGGGATTTATGTTTCCACTTT-TG-TGGTACTATGCTA 447
|||||||||||||||||||||||||| ||| |||| || |||| | ||||||||||| |
Sbjct 447 ATCGGATGGTTCTCCTTTCTCTTGGGTTTTGTGTT-CC-CTTTCTTATGGTACTATGCAA 504
Query 448 CATTTCTT-TATTTCGGGAACTATTACCGCAAAGATCCTCGAGAAAGAGCCGGTCTTGCT 506
|| || || |||||||||||||| |||||||| |||||| ||||||||||||| ||||||
Sbjct 505 CACTT-TTATATTTCGGGAACTACTACCGCAAGGATCCTAGAGAAAGAGCCGGCCTTGCT 563
Query 507 GCTTCAGCAATCACTGCGATGGGATTCTCTCT-TGTGTTACTCGTGATTTTTGCTTTCCG 565
||||| ||||||||||||||||||||||| || | || |||| |||||| ||| |||| |
Sbjct 564 GCTTCCGCAATCACTGCGATGGGATTCTCCCTCT-TGCTACTAGTGATTGTTGTTTTCTG 622
Query 566 GTGG 569
||||
Sbjct 623 GTGG 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5