BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495801 Length=2112 Score E Sequences producing significant alignments: (Bits) Value AT5G57070.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2261 0.0 > AT5G57070.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:23096174-23098451 FORWARD LENGTH=2278 Length=2278 Score = 2261 bits (1224), Expect = 0.0 Identities = 1602/1777 (90%), Gaps = 55/1777 (3%) Strand=Plus/Plus Query 1 TCTATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTAATCTGGCCGCAGT 60 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 22 TCTATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTGATCTGGCCCCAGT 81 Query 61 TTGAATCTACCGGATATACTCACCGGAGATCACCGATTCCGGCGATGTTAGTTCCGGCGA 120 |||| |||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||| Sbjct 82 TTGACTCTACCGGATATGCTCGCCGGAGATCATCGATTCCGGCGATTTTAGTTCCGGCGA 141 Query 121 TGATCGGAGTTATTTCAGCGGCGATTTTTCTTTTGTTTGTGAACTTTGT-GATCCCTCCG 179 |||||||||| | ||||||||||||||||||| | ||||||| ||| || | | ||| || Sbjct 142 TGATCGGAGTAACTTCAGCGGCGATTTTTCTTGTCTTTGTGACCTTCGTCG-TTCCTACG 200 Query 180 TTTCTCTCGGTCACATCTCAGATTCTTCAGCC-GTCATCGGTGAAACGAGGATGGGATTC 238 |||||||| ||||||||||||||||||||||| | | |||||||| |||||||||||||| Sbjct 201 TTTCTCTCAGTCACATCTCAGATTCTTCAGCCAG-CTTCGGTGAAGCGAGGATGGGATTC 259 Query 239 GATAAACGTCGTTTTAGTAGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGTAACGA 298 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 260 GATAAACGTGGTTTTAGTGGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGAAACGA 319 Query 299 TGACGGATTGTCGTCAGAGTCTTTACACGGCGGAGAAGAAGAAGAAGT---AGGAGGAGC 355 ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 320 CGACGGATTGTCTTCGGAGTCTTTACACGGCGGAGAAGAAGAAGAAGTAGGAGGAGGAGC 379 Query 356 TGTGACGAGTGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCTTCATCGTCGGC 415 || |||| ||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct 380 CGTTACGAATGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCCTCGTCGTCGAC 439 Query 416 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGACGCCGATAGGCTTAAGATCTATGAGAG 475 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 440 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGATTCTGATAGGCTTAAGATCTATGAGAG 499 Query 476 TGTGAGTAGTCGGAGTTTCTCTCATGGATTACCGGTTACC-GGAACTGTACCGTTGAGGC 534 ||| |||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| Sbjct 500 TGTAAGTAGTCGAAGTTTTTCTCATGGATTACCGGTTACCGGGAA-TGTACCGTTGAGGC 558 Query 535 GTAGTTGTAGTTCGTATCCTGATCTGAGACAAGGAGTTTTCAGGGAAACTGGCGATCGCC 594 ||||| |||| || ||||||||||| |||||||||||||| || |||||||||||||| | Sbjct 559 GTAGTAGTAGCTCTTATCCTGATCTCAGACAAGGAGTTTTTAGAGAAACTGGCGATCGAC 618 Query 595 GGTTTCGGTTTTACGATGA-TT-----TCGA-AA-T-CC-AT---A--A-TC--GTTCTT 636 |||| |||||||| ||||| || |||| || | || || | | || |||||| Sbjct 619 GGTTCCGGTTTTATGATGATTTCGAAATCGATAAGTACCGATCGCAGGATTCGAGTTCTT 678 Query 637 ACGAAGAATTTCAGAATCGTTCTAAAA-TAGAGATC---GAAGAAGAATCTGAGCCTAAA 692 || || |||||||||||| |||||||| | || ||| ||||||||||||||||||||| Sbjct 679 ACCAACAATTTCAGAATCTTTCTAAAACT-GAAATCGAGGAAGAAGAATCTGAGCCTAAA 737 Query 693 GAGATTCAGATTGATACATTCGTTGTAAAACCGTCTTCTCCGCCGCAACAATCATCGGCA 752 ||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| Sbjct 738 GAGATTCAGATTGATACGTTCGTTGTAAAACCGTCTTCTCCGCCGCAACAACCACCGGCA 797 Query 753 CCACCAACACCTCCTCCTCCTCCTGCACCTCCGCCGGTTGAAGTTTCC-CAGAAACCGAG 811 | || |||| |||||||| || |||||||||||||||||| |||| ||||||||||| Sbjct 798 --A-CACCACCACCTCCTCC-CC--CACCTCCGCCGGTTGAAG-TTCCGCAGAAACCGAG 850 Query 812 AAGGACTCATCGCTCTGTTAGAAACAGAGATATACAAGAAAACGTAAAACGCAATGACAT 871 |||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| | Sbjct 851 AAGGACTCATCGTTCTGTTAGAAACAGAGATTTACAAGAAAACGCCAAACGCAGTGAGAC 910 Query 872 TAAGTTTAAACGAGCGTTTCAACCT----C--CA--A-ATCCACCACCGCCTCCACCACC 922 ||||||||||||| ||||||| ||| | || | || |||||||| |||||||| Sbjct 911 TAAGTTTAAACGAACGTTTCAGCCTCCGCCGTCACCACCGCCTCCACCGCCCCCACCACC 970 Query 923 TCCTCCGCCGCTGATAACCGCGACGCCACCGAGAAAGCAAGAAACTCTTCAACGACGAAA 982 ||||| |||||| ||| |||| |||||||| ||||| |||| |||||||||| || |||| Sbjct 971 TCCTCAGCCGCTTATAGCCGCTACGCCACCAAGAAAACAAGGAACTCTTCAAAGAAGAAA 1030 Query 983 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCaaggaaagag 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1031 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCAAGGGAAGAA 1090 Query 1043 gaagaagaagattcagaaatcaaagagaaaggagagaaTCGAATCTTCTCCGGCGGTGGT 1102 |||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| Sbjct 1091 GAAGAAGAAGCTTCAGAAATCGAAGAGAAAAGAGAGAATCGAATCTTCTCCGATGGTGGA 1150 Query 1103 GGATG-AGACGGAACCACCGCAATACCAATCCTTAATtccaccaccgtctccgcctcctc 1161 |||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1151 AGATGTA-ACGGAACCACCGCAATACCAATCGTTAATCCCACCACCGTCTCCGCCTCCTC 1209 Query 1162 ctccaccacctcctccacctccgcct-cGATCGTCACAATCAGTATTCTACGGATTGTTT 1220 |||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| Sbjct 1210 CTCCACCACCACCTCCGCCTCC-ATTGCGATCGTCACAATCAGTATTCTACGGATTGTTC 1268 Query 1221 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1328 Query 1281 CCGCCGAGACACACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAACTCCGGAAGA 1340 ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1329 CCGCCGAGATATACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAAATCCGGAAGA 1388 Query 1341 CCTCCGCGTCCGACGAAACCGACGAATTTCAACGAAGAGAACAACGGCCAAGGATCTCCG 1400 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1389 CCTCCGCGTCCGACGAAACCGAAGAATTTCAATGAAGAGAACAACGGCCAAGGATCTCCG 1448 Query 1401 TTAATCCAAATTACGCCTCCACCACCTCCACCGCCTCCATTTAGAGTTCCGCCGCTAAAA 1460 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 1449 TTAATCCAAATTACGCCTCCACCTCCACCACCGCCTCCGTTTAGAGTTCCGCCGCTAAAA 1508 Query 1461 T-TCGTCGTGAGTGGTGATTTCGCGAAAATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1519 | | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1509 TAT-GTCGTGAGTGGTGATTTCGCGAAGATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1567 Query 1520 CCCTGAGCGAGAAGTGATCGACATCGGTTGGGGTCTAGAACTCACACAATCTGACGACGG 1579 |||||| || |||||| |||| |||||||||||||||||||||||||||||||| | ||| Sbjct 1568 CCCTGAACGGGAAGTGTTCGATATCGGTTGGGGTCTAGAACTCACACAATCTGATGGCGG 1627 Query 1580 AGTTAAAACAAAAGCAGCCGTCGGCGGCGGCGGTATGCCGGGATTCTGTCCAAGCCCGGA 1639 |||| | || ||||| |||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1628 AGTTGAGACTAAAGCTGCCGTCAGCGGCGGCGGTATGCCGGGATTCTGCCCAAGCCCGGA 1687 Query 1640 CGTTGATACGAAAGCCGACAACTTCATCGCCAGGCTTAGAGACGAGTGGAGGCTCGATAA 1699 ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 1688 CGTTGATACGAAAGCCGACAATTTCATTGCCAGGCTTAGAGATGAGTGGAGGCTCGATAA 1747 Query 1700 GATCAACTCCGTGAACAGAAAAAGGTAAATGGGCTTT 1736 |||||| |||||||| ||||| |||||| |||||||| Sbjct 1748 GATCAATTCCGTGAATAGAAAGAGGTAACTGGGCTTT 1784 Score = 250 bits (135), Expect = 4e-65 Identities = 214/248 (86%), Gaps = 22/248 (9%) Strand=Plus/Plus Query 1793 TTTTATATTTGATTGGC-AAATTCGTTGTGATTTTAAGCAATGTGCAGACATACACAAGG 1851 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1919 TTTTATATTTGATTGGCGAAATTCGTTGTGATTTTAAGCAATGTGCAG-------CAAGG 1971 Query 1852 ACTCGGA-TT--TAAGTTACGGGTAATATTGGCATTATCGGTATAGTTATTAGTGGTAAC 1908 |||| || || ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1972 ACTC-GAGTTCAAAAGTTACGGGTAATATTGGCATTATTGGTATAGTTATTAGTGGTAAA 2030 Query 1909 TGG-TTCGAACTGGCTGGTTAG-TTTTTGGGTTTAACCGGTTGAGGGATTTTGGTTTGGT 1966 ||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 2031 TGGTTTCAAACTGGCTGGTTAGTTTTTTGGGTTTAACCGGTTGAGGGATTTTGCTTTGGT 2090 Query 1967 GTGTTTGGGGTATTCAGTTTG------G-AGTGTCTGATGAAAAGTCAATAACTTTGGTG 2019 |||||| | ||||| ||||| | |||||| |||||||| |||||||||| |||| Sbjct 2091 GTGTTTTGATTATTCGGTTTGAACTTTGGAGTGTCAGATGAAAACTCAATAACTTCGGTG 2150 Query 2020 TTGA-TGT 2026 |||| ||| Sbjct 2151 TTGAATGT 2158 Score = 145 bits (78), Expect = 2e-33 Identities = 86/90 (96%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 2023 ATGTATAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAATTTTGTTGGG 2082 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2188 ATGTACAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAGTTTTGTTGGG 2247 Query 2083 CCTACCTCTTGTGACCTTTCCATTTCCCTT 2112 ||||||||||||||||||||| | |||||| Sbjct 2248 CCTACCTCTTGTGACCTTTCCCTCTCCCTT 2277 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104718336870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5