BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495801
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57070.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2261 0.0
> AT5G57070.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:23096174-23098451 FORWARD LENGTH=2278
Length=2278
Score = 2261 bits (1224), Expect = 0.0
Identities = 1602/1777 (90%), Gaps = 55/1777 (3%)
Strand=Plus/Plus
Query 1 TCTATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTAATCTGGCCGCAGT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 22 TCTATTCAAAAATTATACCGGCAAAAATGGACGATCAACCGCCGCTGATCTGGCCCCAGT 81
Query 61 TTGAATCTACCGGATATACTCACCGGAGATCACCGATTCCGGCGATGTTAGTTCCGGCGA 120
|||| |||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 82 TTGACTCTACCGGATATGCTCGCCGGAGATCATCGATTCCGGCGATTTTAGTTCCGGCGA 141
Query 121 TGATCGGAGTTATTTCAGCGGCGATTTTTCTTTTGTTTGTGAACTTTGT-GATCCCTCCG 179
|||||||||| | ||||||||||||||||||| | ||||||| ||| || | | ||| ||
Sbjct 142 TGATCGGAGTAACTTCAGCGGCGATTTTTCTTGTCTTTGTGACCTTCGTCG-TTCCTACG 200
Query 180 TTTCTCTCGGTCACATCTCAGATTCTTCAGCC-GTCATCGGTGAAACGAGGATGGGATTC 238
|||||||| ||||||||||||||||||||||| | | |||||||| ||||||||||||||
Sbjct 201 TTTCTCTCAGTCACATCTCAGATTCTTCAGCCAG-CTTCGGTGAAGCGAGGATGGGATTC 259
Query 239 GATAAACGTCGTTTTAGTAGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGTAACGA 298
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 260 GATAAACGTGGTTTTAGTGGTTTTCGCGATTCTCTGCGGCGTACTCGCTAGACGAAACGA 319
Query 299 TGACGGATTGTCGTCAGAGTCTTTACACGGCGGAGAAGAAGAAGAAGT---AGGAGGAGC 355
||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 320 CGACGGATTGTCTTCGGAGTCTTTACACGGCGGAGAAGAAGAAGAAGTAGGAGGAGGAGC 379
Query 356 TGTGACGAGTGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCTTCATCGTCGGC 415
|| |||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 380 CGTTACGAATGGTGAAATGACCGTCGGTGAGATTAGCAAAATCTCATCCTCGTCGTCGAC 439
Query 416 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGACGCCGATAGGCTTAAGATCTATGAGAG 475
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 440 GGTTTCAGAGCAGTGGTTTGATGACGTGTATGATTCTGATAGGCTTAAGATCTATGAGAG 499
Query 476 TGTGAGTAGTCGGAGTTTCTCTCATGGATTACCGGTTACC-GGAACTGTACCGTTGAGGC 534
||| |||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 500 TGTAAGTAGTCGAAGTTTTTCTCATGGATTACCGGTTACCGGGAA-TGTACCGTTGAGGC 558
Query 535 GTAGTTGTAGTTCGTATCCTGATCTGAGACAAGGAGTTTTCAGGGAAACTGGCGATCGCC 594
||||| |||| || ||||||||||| |||||||||||||| || |||||||||||||| |
Sbjct 559 GTAGTAGTAGCTCTTATCCTGATCTCAGACAAGGAGTTTTTAGAGAAACTGGCGATCGAC 618
Query 595 GGTTTCGGTTTTACGATGA-TT-----TCGA-AA-T-CC-AT---A--A-TC--GTTCTT 636
|||| |||||||| ||||| || |||| || | || || | | || ||||||
Sbjct 619 GGTTCCGGTTTTATGATGATTTCGAAATCGATAAGTACCGATCGCAGGATTCGAGTTCTT 678
Query 637 ACGAAGAATTTCAGAATCGTTCTAAAA-TAGAGATC---GAAGAAGAATCTGAGCCTAAA 692
|| || |||||||||||| |||||||| | || ||| |||||||||||||||||||||
Sbjct 679 ACCAACAATTTCAGAATCTTTCTAAAACT-GAAATCGAGGAAGAAGAATCTGAGCCTAAA 737
Query 693 GAGATTCAGATTGATACATTCGTTGTAAAACCGTCTTCTCCGCCGCAACAATCATCGGCA 752
||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 738 GAGATTCAGATTGATACGTTCGTTGTAAAACCGTCTTCTCCGCCGCAACAACCACCGGCA 797
Query 753 CCACCAACACCTCCTCCTCCTCCTGCACCTCCGCCGGTTGAAGTTTCC-CAGAAACCGAG 811
| || |||| |||||||| || |||||||||||||||||| |||| |||||||||||
Sbjct 798 --A-CACCACCACCTCCTCC-CC--CACCTCCGCCGGTTGAAG-TTCCGCAGAAACCGAG 850
Query 812 AAGGACTCATCGCTCTGTTAGAAACAGAGATATACAAGAAAACGTAAAACGCAATGACAT 871
|||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||| |
Sbjct 851 AAGGACTCATCGTTCTGTTAGAAACAGAGATTTACAAGAAAACGCCAAACGCAGTGAGAC 910
Query 872 TAAGTTTAAACGAGCGTTTCAACCT----C--CA--A-ATCCACCACCGCCTCCACCACC 922
||||||||||||| ||||||| ||| | || | || |||||||| ||||||||
Sbjct 911 TAAGTTTAAACGAACGTTTCAGCCTCCGCCGTCACCACCGCCTCCACCGCCCCCACCACC 970
Query 923 TCCTCCGCCGCTGATAACCGCGACGCCACCGAGAAAGCAAGAAACTCTTCAACGACGAAA 982
||||| |||||| ||| |||| |||||||| ||||| |||| |||||||||| || ||||
Sbjct 971 TCCTCAGCCGCTTATAGCCGCTACGCCACCAAGAAAACAAGGAACTCTTCAAAGAAGAAA 1030
Query 983 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCaaggaaagag 1042
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1031 GAGCAATGCGGCGAAAGAGATTAAAATGGTTTTCGCTTCTCTGTATAATCAAGGGAAGAA 1090
Query 1043 gaagaagaagattcagaaatcaaagagaaaggagagaaTCGAATCTTCTCCGGCGGTGGT 1102
|||||||||| |||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 1091 GAAGAAGAAGCTTCAGAAATCGAAGAGAAAAGAGAGAATCGAATCTTCTCCGATGGTGGA 1150
Query 1103 GGATG-AGACGGAACCACCGCAATACCAATCCTTAATtccaccaccgtctccgcctcctc 1161
|||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1151 AGATGTA-ACGGAACCACCGCAATACCAATCGTTAATCCCACCACCGTCTCCGCCTCCTC 1209
Query 1162 ctccaccacctcctccacctccgcct-cGATCGTCACAATCAGTATTCTACGGATTGTTT 1220
|||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 1210 CTCCACCACCACCTCCGCCTCC-ATTGCGATCGTCACAATCAGTATTCTACGGATTGTTC 1268
Query 1221 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AAGAAAGGAGTTAAGAGCAACAAAAAGATTCATTCCGTTCCGGCGCCGCCTCCACCTCCA 1328
Query 1281 CCGCCGAGACACACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAACTCCGGAAGA 1340
||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1329 CCGCCGAGATATACCCAATTTGATCCTCAGACACCACCACGGAGAGTGAAATCCGGAAGA 1388
Query 1341 CCTCCGCGTCCGACGAAACCGACGAATTTCAACGAAGAGAACAACGGCCAAGGATCTCCG 1400
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1389 CCTCCGCGTCCGACGAAACCGAAGAATTTCAATGAAGAGAACAACGGCCAAGGATCTCCG 1448
Query 1401 TTAATCCAAATTACGCCTCCACCACCTCCACCGCCTCCATTTAGAGTTCCGCCGCTAAAA 1460
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1449 TTAATCCAAATTACGCCTCCACCTCCACCACCGCCTCCGTTTAGAGTTCCGCCGCTAAAA 1508
Query 1461 T-TCGTCGTGAGTGGTGATTTCGCGAAAATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1519
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1509 TAT-GTCGTGAGTGGTGATTTCGCGAAGATACGGAGTAATCAGAGCTCTAGATGTAGCTC 1567
Query 1520 CCCTGAGCGAGAAGTGATCGACATCGGTTGGGGTCTAGAACTCACACAATCTGACGACGG 1579
|||||| || |||||| |||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1568 CCCTGAACGGGAAGTGTTCGATATCGGTTGGGGTCTAGAACTCACACAATCTGATGGCGG 1627
Query 1580 AGTTAAAACAAAAGCAGCCGTCGGCGGCGGCGGTATGCCGGGATTCTGTCCAAGCCCGGA 1639
|||| | || ||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1628 AGTTGAGACTAAAGCTGCCGTCAGCGGCGGCGGTATGCCGGGATTCTGCCCAAGCCCGGA 1687
Query 1640 CGTTGATACGAAAGCCGACAACTTCATCGCCAGGCTTAGAGACGAGTGGAGGCTCGATAA 1699
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1688 CGTTGATACGAAAGCCGACAATTTCATTGCCAGGCTTAGAGATGAGTGGAGGCTCGATAA 1747
Query 1700 GATCAACTCCGTGAACAGAAAAAGGTAAATGGGCTTT 1736
|||||| |||||||| ||||| |||||| ||||||||
Sbjct 1748 GATCAATTCCGTGAATAGAAAGAGGTAACTGGGCTTT 1784
Score = 250 bits (135), Expect = 4e-65
Identities = 214/248 (86%), Gaps = 22/248 (9%)
Strand=Plus/Plus
Query 1793 TTTTATATTTGATTGGC-AAATTCGTTGTGATTTTAAGCAATGTGCAGACATACACAAGG 1851
||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1919 TTTTATATTTGATTGGCGAAATTCGTTGTGATTTTAAGCAATGTGCAG-------CAAGG 1971
Query 1852 ACTCGGA-TT--TAAGTTACGGGTAATATTGGCATTATCGGTATAGTTATTAGTGGTAAC 1908
|||| || || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1972 ACTC-GAGTTCAAAAGTTACGGGTAATATTGGCATTATTGGTATAGTTATTAGTGGTAAA 2030
Query 1909 TGG-TTCGAACTGGCTGGTTAG-TTTTTGGGTTTAACCGGTTGAGGGATTTTGGTTTGGT 1966
||| ||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 2031 TGGTTTCAAACTGGCTGGTTAGTTTTTTGGGTTTAACCGGTTGAGGGATTTTGCTTTGGT 2090
Query 1967 GTGTTTGGGGTATTCAGTTTG------G-AGTGTCTGATGAAAAGTCAATAACTTTGGTG 2019
|||||| | ||||| ||||| | |||||| |||||||| |||||||||| ||||
Sbjct 2091 GTGTTTTGATTATTCGGTTTGAACTTTGGAGTGTCAGATGAAAACTCAATAACTTCGGTG 2150
Query 2020 TTGA-TGT 2026
|||| |||
Sbjct 2151 TTGAATGT 2158
Score = 145 bits (78), Expect = 2e-33
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 2023 ATGTATAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAATTTTGTTGGG 2082
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2188 ATGTACAATGTATGGCCCATTGATATGAAAATATAGTTGTGGGCTCTGAGTTTTGTTGGG 2247
Query 2083 CCTACCTCTTGTGACCTTTCCATTTCCCTT 2112
||||||||||||||||||||| | ||||||
Sbjct 2248 CCTACCTCTTGTGACCTTTCCCTCTCCCTT 2277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104718336870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5