BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495806
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57120.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1024 0.0
> AT5G57120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation
motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718);
Has 101969 Blast hits to 55488 proteins in 2506
species: Archae - 424; Bacteria - 13843; Metazoa - 37674;
Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes
- 34792 (source: NCBI BLink). | chr5:23122540-23124513 REVERSE
LENGTH=1333
Length=1333
Score = 1024 bits (554), Expect = 0.0
Identities = 783/884 (89%), Gaps = 53/884 (6%)
Strand=Plus/Plus
Query 339 Tgaagaaggag--aagaagaagaagaagaagaaggaaacaaaggtggaggtaactgaaga 396
|||||| |||| ||| |||||||||||||||||||||| |||||| | ||||| || ||
Sbjct 464 TGAAGATGGAGTTAAGGAGAAGAAGAAGAAGAAGGAAACTAAGGTGAAAGTAACCGAGGA 523
Query 397 ggagaaggttaaagagaCTGATGCTAAGATCGATGATGGAGTTAAGGAGAAAAAGAAGAA 456
||||||||| ||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 524 GGAGAAGGTCAAAGAGACTGATGCTGTGATTGAAGATGGAGTTAAGGAGAAAAAGAAGAA 583
Query 457 GAAAAACAAGTCGAAATCTGTTGAGGCTGGTGATGATAAGGAGAAAGTTTCCAAGAAAAG 516
||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 584 GAAGAGCAAGTCGAAATCTGTTGAGGCTGATGATGATAAGGAGAAAGTTTCAAAGAAAAG 643
Query 517 GAAAAGATCAGAGCCTGAAGAGACTAAAGAAGAGACTGAGGATGATGATGAAGAATCAAA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GAAAAGATCAGAGCCTGAAGAGACTAAAGAAGAGACTGAGGATGATGATGAAGAATCAAA 703
Query 577 ACGTAGGAAGAAGGAAGAGAA--T-GTT-----C----A--G-G----A-A-ACACCTGT 615
||||||||||||||||||||| | ||| | | | | | | ||||||||
Sbjct 704 ACGTAGGAAGAAGGAAGAGAATGTAGTTGAAAACGATGAGGGTGTTCAAGAGACACCTGT 763
Query 616 TAAGGAGACTGAAACTAAGGAAAATGGAAATGTTGAGAAAAGCCAAACGAAA-TCAACAA 674
|||||||||||||||||||||||| ||||||| ||||||||| | || ||| |||||||
Sbjct 764 TAAGGAGACTGAAACTAAGGAAAACGGAAATGCTGAGAAAAGTGAGAC-AAAGTCAACAA 822
Query 675 ATCAGAAGTCTGGAAAAGGGCTTTCTAACTCAAAAGAGCCGAAGAAACCGTTTCAGAGGG 734
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ATCAGAAGTCAGGAAAAGGGCTTTCTAACTCAAAAGAGCCGAAGAAACCGTTTCAGAGGG 882
Query 735 TGAACGTTGACGAAATTGTGTTCACTGA-ACATAGCAACTCGTACAATTCAAAGCATGGT 793
||||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||
Sbjct 883 TGAACGTTGACGAAATTGTGTACACTGAGA-ATAGCAACTCGTACTATTCAAAGGGTGGT 941
Query 794 GCTGAATAT-GGCTATGGTCTTAAAGCTCAAGAGGTTCTCGGGCAAGTGAAAGGAAGGGA 852
|||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 942 GCTGAA-ATTGGCTATGGTCTTAAAGCTCAAGAGGTTCTCGGGCAAGTGAGAGGAAGGGA 1000
Query 853 TTTCCGACATGAGAAGACGAAGAAGAAACGAGGAAGCTACAGAGGAGGATCGATCGATCT 912
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1001 TTTCCGACATGAGAAGACGAAGAAGAAACGAGGAAGCTACAGAGGAGGATTGATCGATCA 1060
Query 913 TA-AGTCTCATTCAACTAAGTTTCCTAACTCAGACT-CAGAAAATGAATGATTGATAAGC 970
| |||| ||||| ||||||||| |||||||||| | ||| |||||||||||||||
Sbjct 1061 -AGAGTCACATTCGACTAAGTTTAATAACTCAGACGAC-GAA---GAATGATTGATAAGC 1115
Query 971 AAACAACACTGCctttttcacattgcttcttttttatttatctttttattttcttttgct 1030
| |||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||
Sbjct 1116 AGACAACACTGCCTTTTTGACATTGCTTCGTTTCGATTTATCTTTTTCTTTTCTTTTGCT 1175
Query 1031 ttGATCATTTCAATACCC-TAAAAGGGCTCAAGTTTTGTGTCCGTTAA-TC-TT-G-TA- 1084
|||||||||||||||||| ||| ||||||||||||||||||| || | || || | ||
Sbjct 1176 TTGATCATTTCAATACCCGTAATAGGGCTCAAGTTTTGTGTCTGTGCACTCCTTTGATAC 1235
Query 1085 --A---GAACATGATTCAGTTTCAGTTTCTTGTTCACTAAATTGACTTCAAAGATTCTTG 1139
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 TTATATGAACATGATTCAGTTTCAGTTTCTTGTTCACTAAATTGACTTCAAAGATTCTTG 1295
Query 1140 TTTTAATTACTGTTGAGTTTGAGCTTTGAAAATGAGAAATTGCT 1183
|||||||| |||| | | | || | ||||||||||| |||||
Sbjct 1296 TTTTAATTTCTGT-G--T--G-GCATAGAAAATGAGAATTTGCT 1333
Score = 656 bits (355), Expect = 0.0
Identities = 428/463 (92%), Gaps = 5/463 (1%)
Strand=Plus/Plus
Query 1 AACCCTAGCAGCAGAGCCTCCCTTAAACCCAGCTCTCTTAGCTCTCAAGGCTCGTCAATT 60
|||||||||||||||| || || |||||||||||||||||||||||| | ||||||||||
Sbjct 35 AACCCTAGCAGCAGAGTCTTCCGTAAACCCAGCTCTCTTAGCTCTCACGCCTCGTCAATT 94
Query 61 GTTGATCTCTA-GACCAGATATGGGCAACGAGAGCAAAACCTCGACTTTGGAATCGGAGC 119
||||| || || || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 95 GTTGACCTGTAGGA-TAGATATGGGCAACGAGAGCAAAACCTCGGCTTTGGAATCGGAGC 153
Query 120 AGAAGGCTCTTCTTCTTCGTTCGATAGCTCAATACTTGGAGCTATGTGGGTTTTCCAAAT 179
|||||||||||||||| |||||| |||||||||||||||| | |||||| ||||||||||
Sbjct 154 AGAAGGCTCTTCTTCTCCGTTCGGTAGCTCAATACTTGGAACGATGTGGTTTTTCCAAAT 213
Query 180 GCTTCAAGAAATTTCTCTCCGAAGCTGAAATCGAGAAGAAGGAATTGAACACTAGTTTAC 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 GCTTCAAGAAATTGCTCTCCGAAGCTGAAATCGAGAAGAAGGAATTGAACACTAGTTTAC 273
Query 240 CTGATTTAGAGGATATTTTCAGCGAGTTTTTGAAGAAGAGAGATCATGAAGCTGCAGCT- 298
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 274 CTGATTTAGAGGAAATTTTCAGCGAGTTTTTGAACAAGAGAGATCATGAAGCTGCAGCTA 333
Query 299 --GGAAATACAGAGGCGAATGTAGTGGAAGGTGTAGAGAATGTgaagaaggagaagaaga 356
|||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 334 ATGGAAATACCGAGGCGAATGTAGTGGAAGCTGTAGAGAATGTAAAGAAGGATAAGAAGA 393
Query 357 agaagaagaagaaggaaacaaaggtggaggtaactgaagaggagaaggttaaagagaCTG 416
|||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 394 AGAAGAAGAACAAGGAAACAAAGGTGGAGGTAACTGAGGAAGAGAAGGTCAAAGAGACTG 453
Query 417 ATGCTAAGATCGATGATGGAGTTAAGGAGAAAAAGAAGAAGAA 459
||||| ||| || ||||||||||||||||| |||||||||||
Sbjct 454 ATGCTGTGATTGAAGATGGAGTTAAGGAGAAGAAGAAGAAGAA 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5