BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495807

Length=664
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57123.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   752    0.0  


> AT5G57123.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G29905.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:23126922-23127654 REVERSE LENGTH=733
Length=733

 Score =  752 bits (407),  Expect = 0.0
 Identities = 494/534 (93%), Gaps = 13/534 (2%)
 Strand=Plus/Plus

Query  134  AAGAATCAGATCTGAGaaaaaaaaCTACAATGTGTCTGGTGTGTTTATGTGACGAGGAAG  193
            |||| |||||||||||| | ||||  ||||||||| |||||||||||||||| |||||||
Sbjct  210  AAGACTCAGATCTGAGAGAGAAAA--ACAATGTGTTTGGTGTGTTTATGTGATGAGGAAG  267

Query  194  AGACAGAGTTAGGGAGACAACAAGCACCTGGATCGTGTCCTTATTGTGGAGGTAAAGTGC  253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  AGACAGAGTTAGGGAGACAACAAGCACCTGGATCGTGTCCTTATTGTGGAGGTAAAGTGC  327

Query  254  AAATGCTTGATGTCGAAAGAAAATGGATGTTCTGTTTCGTTCCTCTTTGTTTCAAGATCA  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  328  AAATGCTTGATGTCGAAAGAAAATGGATGTTCTGTTTCGTTCCTCTTTGTTTCAAGATCA  387

Query  314  AGAGGAAGTACTTGTGTTCTTCTTGCGATCGTCGTCTCGTTTTGTATCATTAAAATAATA  373
            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct  388  AGAGGAAGTACTCGTGTTCTTCTTGTGATCGTCGTCTCGTTTTGTATCATTAAAATTATA  447

Query  374  ATATTGTAGTTTCtttttttATTAATGTCCTTTCTTAATAATTAAAGTAAATTAATTAGC  433
            |||||||||||| |||||  |||||| ||||||||||||||||||||| |||||||||||
Sbjct  448  ATATTGTAGTTT-TTTTT--ATTAATTTCCTTTCTTAATAATTAAAGTCAATTAATTAGC  504

Query  434  GTTTTAATCAAGGGAAATAATTTTAGTCGGTGGTTTTTGGTATGGTTAGTATTTCTAGTC  493
            |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct  505  GTTTTAATCAAGGGAAATAATTTTAGTCGGTGGTATTTGGTACGGTTAGTATATCTAGTC  564

Query  494  GTGTAAACCGACATTGATCTTTTAGAAGTGTTGTAGAACTCTCTCGATTCAAATTTGATG  553
            ||||||||||||||||||||||||||| |||| ||||||| |||||||||||  || |||
Sbjct  565  GTGTAAACCGACATTGATCTTTTAGAAATGTTATAGAACTATCTCGATTCAACCTTAATG  624

Query  554  TACTTTTCCTTT-GTCTTCAAGTGGCTTCTCAAGTCGATCCAAATTAAAATA-TATT-CA  610
            ||||||| |||| |||||| |||| ||||| |||||| |||||||||||| | | || ||
Sbjct  625  TACTTTTTCTTTTGTCTTCGAGTGTCTTCTTAAGTCGGTCCAAATTAAAA-AGTGTTTCA  683

Query  611  ATATTATATGTGTAATTGTGTTGTTAATGTAATGATGAATCTCAAGTTTGGTGT  664
            | || ||||||  ||| ||||||||| |||||||||||||||||||||||||||
Sbjct  684  A-AT-ATATGT--AATCGTGTTGTTAGTGTAATGATGAATCTCAAGTTTGGTGT  733


 Score =  159 bits (86),  Expect = 2e-38
 Identities = 105/114 (92%), Gaps = 2/114 (2%)
 Strand=Plus/Plus

Query  1    TTCAATATAAGCCTCCGCAAGAAGTTTCTCAGAAACAGTTTTCTCAAGAAAAGACTTGAA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  42   TTCAATATAAGCCTCCGCAAGAAGTTTCTCAGAAACAGTTTTCTCAAGAAAATAATTGAA  101

Query  61   TTTTCCTCAAAATAC-CACAAAATTCTCTGACCTACCAAACAAATTAAACCCAT  113
            |||||||| |||  | ||||||||||||||| || ||||||||| |||||||||
Sbjct  102  TTTTCCTCTAAAG-CTCACAAAATTCTCTGATCTTCCAAACAAAATAAACCCAT  154



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32099619933


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5