BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495811
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1101 0.0
> AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152174-23154941 FORWARD
LENGTH=1122
Length=1122
Score = 1101 bits (596), Expect = 0.0
Identities = 634/652 (97%), Gaps = 3/652 (0%)
Strand=Plus/Plus
Query 1 TTGTAGGAAAATGGAGGATATCGTCGACCAAGAATTCAGCAATTACTGGGAACCTAACTC 60
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 178 TTGTCGGAAAATGGAGGATATCGTCGACCAAGAATTAAGCAATTACTGGGAACCTAGCTC 237
Query 61 CTTCCTCCAAAACGAAGACTTCGAATACGAC---AGCTGGCCTTTGGAGGAAGCTATTTC 117
||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 238 CTTCCTCCAAAACGAAGACTTCGAATACGACAGAAGCTGGCCTTTGGAAGAAGCCATTTC 297
Query 118 TGGGTCGTATGATTCGAGTTCGCCGGATGGGGCTGCTTCGTCGCCGGCTTCTAAGAATAT 177
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 298 TGGGTCGTATGATTCGAGTTCGCCGGATGGAGCTGCTTCGTCGCCGGCTTCTAAGAATAT 357
Query 178 TGTGTCGGAGAGAAACAGAAGACAGAAACTTAACCAGAGACTCTTCGCTCTTCGATCAGT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGTGTCGGAGAGAAACAGAAGACAGAAACTTAACCAGAGACTCTTCGCTCTTCGATCAGT 417
Query 238 TGTTCCCAACATCACTAAGATGGATAAAGCATCAATAATCAAAGATGCTATTAGTTACAT 297
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 418 TGTTCCCAATATCACTAAGATGGATAAAGCCTCAATAATCAAAGATGCTATTAGTTACAT 477
Query 298 ACAAGGATTACAATATGAAGAAGGGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTAC 357
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 AGAAGGATTACAATATGAAGAAAAGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTAC 537
Query 358 ACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTAGTTCCTGTCAC 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 538 ACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTTGTTCCTGTCAC 597
Query 418 ATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGA 657
Query 478 TTTGAAGGTAACATTCATGGGAGAGAGGACAATGGTGGTGAGTGTAACATGTAATAAGAG 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATTGAAGGTAACATTCATGGGAGAGAGGACAATGGTGGTGAGTGTAACATGTAATAAGAG 717
Query 538 GACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCTTTGAATCTCAAAATCCTCAC 597
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 718 GACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCATTGAATCTCAAAATCCTCAC 777
Query 598 TTCCAATCTTACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAG 649
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCCAATCTCACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAG 829
Score = 193 bits (104), Expect = 3e-48
Identities = 110/113 (97%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 649 GGCGGATGAGGAAGAACAAGAGGTGTTGCGGTTAAGAATAGAAACAGGAATAGGAGCTTA 708
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 948 GGCGGATGAAGAAGAACAAGAGGTGTTGCGGTTAAAAATAGAAACAGGAATAGGAGCTTA 1007
Query 709 TAATGAAACTCAAAGCCCCACTTTGAGCATCGACTCTCTTTACTAATAATACT 761
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1008 TAATGAAACTCAAAGCCCTACTTTGAGCATCGACTCTCTTTACTAATAATACT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36972332192
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5