BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495811 Length=761 Score E Sequences producing significant alignments: (Bits) Value AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1101 0.0 > AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:23152174-23154941 FORWARD LENGTH=1122 Length=1122 Score = 1101 bits (596), Expect = 0.0 Identities = 634/652 (97%), Gaps = 3/652 (0%) Strand=Plus/Plus Query 1 TTGTAGGAAAATGGAGGATATCGTCGACCAAGAATTCAGCAATTACTGGGAACCTAACTC 60 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 178 TTGTCGGAAAATGGAGGATATCGTCGACCAAGAATTAAGCAATTACTGGGAACCTAGCTC 237 Query 61 CTTCCTCCAAAACGAAGACTTCGAATACGAC---AGCTGGCCTTTGGAGGAAGCTATTTC 117 ||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 238 CTTCCTCCAAAACGAAGACTTCGAATACGACAGAAGCTGGCCTTTGGAAGAAGCCATTTC 297 Query 118 TGGGTCGTATGATTCGAGTTCGCCGGATGGGGCTGCTTCGTCGCCGGCTTCTAAGAATAT 177 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 298 TGGGTCGTATGATTCGAGTTCGCCGGATGGAGCTGCTTCGTCGCCGGCTTCTAAGAATAT 357 Query 178 TGTGTCGGAGAGAAACAGAAGACAGAAACTTAACCAGAGACTCTTCGCTCTTCGATCAGT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TGTGTCGGAGAGAAACAGAAGACAGAAACTTAACCAGAGACTCTTCGCTCTTCGATCAGT 417 Query 238 TGTTCCCAACATCACTAAGATGGATAAAGCATCAATAATCAAAGATGCTATTAGTTACAT 297 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 418 TGTTCCCAATATCACTAAGATGGATAAAGCCTCAATAATCAAAGATGCTATTAGTTACAT 477 Query 298 ACAAGGATTACAATATGAAGAAGGGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTAC 357 | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 478 AGAAGGATTACAATATGAAGAAAAGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTAC 537 Query 358 ACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTAGTTCCTGTCAC 417 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 538 ACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTTGTTCCTGTCAC 597 Query 418 ATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGA 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 ATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGA 657 Query 478 TTTGAAGGTAACATTCATGGGAGAGAGGACAATGGTGGTGAGTGTAACATGTAATAAGAG 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATTGAAGGTAACATTCATGGGAGAGAGGACAATGGTGGTGAGTGTAACATGTAATAAGAG 717 Query 538 GACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCTTTGAATCTCAAAATCCTCAC 597 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 718 GACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCATTGAATCTCAAAATCCTCAC 777 Query 598 TTCCAATCTTACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAG 649 ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TTCCAATCTCACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAG 829 Score = 193 bits (104), Expect = 3e-48 Identities = 110/113 (97%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 649 GGCGGATGAGGAAGAACAAGAGGTGTTGCGGTTAAGAATAGAAACAGGAATAGGAGCTTA 708 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 948 GGCGGATGAAGAAGAACAAGAGGTGTTGCGGTTAAAAATAGAAACAGGAATAGGAGCTTA 1007 Query 709 TAATGAAACTCAAAGCCCCACTTTGAGCATCGACTCTCTTTACTAATAATACT 761 |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1008 TAATGAAACTCAAAGCCCTACTTTGAGCATCGACTCTCTTTACTAATAATACT 1060 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36972332192 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5