BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495816
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57190.1 | Symbols: PSD2 | phosphatidylserine decarboxylase ... 1526 0.0
> AT5G57190.1 | Symbols: PSD2 | phosphatidylserine decarboxylase
2 | chr5:23171531-23175364 REVERSE LENGTH=1908
Length=1908
Score = 1526 bits (826), Expect = 0.0
Identities = 1099/1220 (90%), Gaps = 62/1220 (5%)
Strand=Plus/Plus
Query 388 AGGAACAAAATCATCGGTTATTGTGAGCTTGATATATTCGATTTTGTAGTGCAGGAACCT 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGGAACAAAATCATCGGTTATTGTGAGCTTGATATATTCGATTTTGTAGTGCAGGAACCT 423
Query 448 GAGTCGGCGTGTAAGTCATTTGACTTGTTAGATCCCACATCATCCAATGTTGTTGGCACC 507
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 424 GAGTCGACTTGTAAGTCATTTAACTTGTTAGATCCCACATCATCCAATGTTGTTGGCTCC 483
Query 508 ATTTTCCTTTCTTGCTCTATTGAGGATCCTGTTGAAACCGAGAGGCGGTTTGCAAAGCGT 567
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 484 ATTTTCCTTTCTTGCGCTATTGAGGATCCTGTTGAAACTGAGAGGCGGTTTGCAAAGCGT 543
Query 568 ATCTTGTCCATTGTGGACTACAATCAAGATGGACAACTGTCGTTTTCGGAGTTCTCTGAT 627
||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 544 ATCTTGTCCATAGTGGACTACAATGAAGATGGACAACTCTCGTTTTCGGAGTTCTCTGAT 603
Query 628 CTAATAAAGGCTTTTGGAAACTTAGTGGCTGCTAACAAGAAGGAGGAGTTGTTCAAAGCC 687
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 604 CTAATAAAGGCTTTTGGAAACTTAGTGGCTGCGAACAAGAAAGAGGAGTTGTTTAAAGCT 663
Query 688 GCTGATCTGAATGGGGACGGTGTTGTGACAATTGACGAGTTGGCTGCGCTTCTTGCTCTT 747
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 664 GCTGACCTGAATGGGGACGGTGTTGTGACGATTGACGAGTTAGCTGCGCTTCTTGCTCTT 723
Query 748 CAACAAGAACAGGAGCCAATTATAAATAATTGTCCGGTGTGTGGTGAGGCTCTTCAGCTC 807
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 724 CAACAAGAACAAGAGCCAATTATAAACAATTGTCCGGTGTGTGGTGAGGCTCTTCAGGTC 783
Query 808 TCTGACAAGCTCAACGCGATGATCCATATGACTCTTTGTTTTGACGAAGGAACGGGTAAT 867
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 784 TCTGACAAGCTCAACGCGATGATTCATATGACTCTTTGTTTTGACGAAGGAACGGGTAAT 843
Query 868 CAAGTGATGACCGGAGGGTTTTTGACTGATAGACAAGCTTCTTATGGTTGGATGTTCAAA 927
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 844 CAAGTGATGACCGGAGGGTTTTTGACTGATAGACAAGCTTCTTATGGATGGATGTTCAAA 903
Query 928 CTAAGTGAATGGACACACTTATCAACTTATGACGTGGGTTTGAATACTGGTTCAAGTGCT 987
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 904 CTAAGTGAATGGACACACTTATCAACTTATGACGTTGGTTTGAATACTGGTTCAAGTGCT 963
Query 988 TCATATATTGTGGTGATTGACCGGAAGAGTAAGAGACTTGTGGAAGAGTTGATTGACTCA 1047
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 964 TCATATATTGTGGTAATTGACCGGAAGAGTAAAAGACTTGTGGAAGAGTTGATTGATTCA 1023
Query 1048 AAGATTGTTCTGTCCATGAGAGCTATTTATCAGTCCAAAATTGGATTCCGACTTATGGAT 1107
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||
Sbjct 1024 AAGATTGTTCTGTCCATGAGAGCTATTTACCAGTCAAAAATTGGACTAAGACTTATGGAT 1083
Query 1108 CAAGGGGCAAAGGAGATTCTACAGAGACTTTCTGAGAAGCAGGGGAAGAAAATGAGCTCA 1167
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CAAGGGGCAAAGGAGATTCTGCAGAGACTTTCTGAGAAGCAGGGGAAGAAAATGAGCTCA 1143
Query 1168 GTTGAATCCGCACAAAAAATACCATGCTTTCTCGAGTTCTTTAAGGCATTTGAGATTTTT 1227
||||||||||||| |||| | || | | | | |||| | | |||
Sbjct 1144 GTTGAATCCGCAC--AAAA-A--ATAC---CAC--G--CTTT----C--TCGAG------ 1179
Query 1228 TGTCTGTTGCTGGATCAAATAAACATGGCTGAAGTCAAGTATTCTCTGCAGCATTTTAAG 1287
| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1180 T-TCT-TT-AAGGATCAAATAAACATGGCTGAAGTCAAGTATCCTCTGCAGCATTTTAAG 1236
Query 1288 ACGTTCAATGAGTTCTTCATCCGGGAGTTGAAACCTGGTGCAAGACCAATTGCTTGCATG 1347
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1237 ACGTTCAATGAGTTCTTTATCCGAGAGTTGAAACCTGGTGCAAGACCAATTGCTTGCATG 1296
Query 1348 AAACGTGATGATGTTGCCGTATGTGCTGCTGATTGTCG-TGTAATGGCATTTCAGTCGGT 1406
|| || |||||||||| |||||||| ||||||||||| | |||||||||||||||||||
Sbjct 1297 AACCGCAATGATGTTGCTGTATGTGCCGCTGATTGTCGAT-TAATGGCATTTCAGTCGGT 1355
Query 1407 GGAGGATAGTAC-ACGTTTCTGGATCAAGAG-AACTCTCAAAGCTGATAAGTTGCAACAC 1464
||| |||||||| | | |||||||||||| | || |||| | | || ||| |
Sbjct 1356 GGAAGATAGTACCA-GATTCTGGATCAAGGGCAA-----AAAG-T--T---TT-CAATA- 1401
Query 1465 ATCTTAAAGTTTTTGCCTCCTTGGGAAGAATGTGAATCCAAAATGCCTTCCTTGATGGAT 1524
| | | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1402 AG---A--G-----GCCTCCTTGGGAAGAATGTGAATCCAAA-TGCCTTCCTTGATGGAT 1450
Query 1525 CTTTGGCTAGAA-CACTACATAGTTCTT--G-ATTATCATCGCTTTCATGTCCCTGTCTC 1580
|||||| || | || || ||| | | |||||||||| |||||||||||||||||
Sbjct 1451 CTTTGGTTATATTCAG-AC-TAGCACCACAGGATTATCATCGGTTTCATGTCCCTGTCTC 1508
Query 1581 TGGAGTCATTGAAAAGTTTG 1600
||||||||||||| ||||||
Sbjct 1509 TGGAGTCATTGAACAGTTTG 1528
Score = 440 bits (238), Expect = 2e-122
Identities = 315/348 (91%), Gaps = 22/348 (6%)
Strand=Plus/Plus
Query 1 ATGGGAAACGGAAACTCAAGGGAGGCTAAAGAATCGAGACGGTCAAAGCTACGACAGAAG 60
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||
Sbjct 1 ATGGGAAACGGAAACTCAAGGGAGGCTAAGGAATCGAGACGGTCAAGGCTACGACATAAG 60
Query 61 CTACAAAAGTTTCGCATTCACCGTCGTCATCTTCGTTGTTCTCGAAACTCAGCAGGAATG 120
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 61 CTACAAAAGTTTCGCATTCACCGTCGTCATCTTCGTAGTTCTCGAAACTCGGCAGGAATG 120
Query 121 GTGATACAACGAGCTGTGTCCGCCGAGGATTTCTCCGGCATTGCGCTTCTCACT-T--T- 176
|||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 121 GTGATACAACGAACTGTTTCCGCCGAGGATTTCTCCGGCATTGCGCTTCTCACTCTCATT 180
Query 177 -------AA--G--G---A----CAAGTGGCTCGCTTGTGTTTCTTTCGGTGAACAGACT 218
|| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCGCGGAAATGAAGTTTAAGGACAAGTGGCTCGCTTGTGTTTCTTTCGGTGAACAGACT 240
Query 219 TTTAGAACTAAAATCTCAGATACTACAGAGAAGCCAATTTGGAACTCAGAGAAGAAGCTT 278
|| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TTCAGAACTGAAATCTCAGATACTACACAGAAGCCAATTTGGAACTCAGAGAAGAAGCTT 300
Query 279 TTGTTGGAGAAAAATGGACCAAGTCTTGCTAGGGTCTCTGTATTTGAG 326
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 TTGTTGGAGAAAAATGGACCAAGTCTTGCTAGGGTCTCAGTATTTGAG 348
Score = 167 bits (90), Expect = 4e-40
Identities = 108/117 (92%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1823 AGGACTCGATCCAGATCGATGAGGATCTCTTGGTAAACAGTGGTAGGTCCTTAGAGACGT 1882
||||| ||||| ||||||| | ||||||||||| |||||||||||||| |||||||| |
Sbjct 1784 AGGACGCGATCGGGATCGATAATGATCTCTTGGTTAACAGTGGTAGGTCTTTAGAGACAT 1843
Query 1883 TAGTGAGAGTTGGAATGCAATTAGGTGTCTCCACAAGGACATTTGCTAGGTCTACAT 1939
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 TAGTGAGTGTTGGAATGCAATTAGGTGTCTCCACAAGGACATTTGCTAGGTCTACAT 1900
Score = 148 bits (80), Expect = 1e-34
Identities = 90/95 (95%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1589 TTGAAAAGTTTGCTTTTATTGCAATCGGTGCGACAATGGTTGGTAGCATAAATTTTGTCA 1648
||| |||| |||||||| ||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1640 TTGGAAAGGTTGCTTTTGTTGCAATCGGTGCAACAATGGTTGGTAGCATAAATTTTGTTA 1699
Query 1649 GAAAGGAAGGAGAGCATGTGAAGAAAGGAGATGAA 1683
|||||||||||||||||||||||||||||||||||
Sbjct 1700 GAAAGGAAGGAGAGCATGTGAAGAAAGGAGATGAA 1734
Score = 54.7 bits (29), Expect = 3e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Plus
Query 1717 GAAGCTTGGTTATTTTTCGTTTGGTGGAAGCAC 1749
||| |||||||||||||||||||||||||||||
Sbjct 1732 GAA-CTTGGTTATTTTTCGTTTGGTGGAAGCAC 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5