BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495818
Length=2569
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57210.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 3474 0.0
> AT5G57210.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr5:23180833-23183811 REVERSE LENGTH=2575
Length=2575
Score = 3474 bits (1881), Expect = 0.0
Identities = 2361/2583 (91%), Gaps = 72/2583 (3%)
Strand=Plus/Plus
Query 1 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCCAAATTGTTTGTTAATTTCCATCGAA 60
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 6 AATTTTATGTTTTCTCATAAACAAAAAGTAAACCCAAA----TTGTT--TTT---TCGAA 56
Query 61 ACAAGAATCGATTTGACACGAAGATTTGATGAAGCAAGA-GCGTTGTGTAGAAGAACATG 119
||||||||||||||| |||||| | | || | | || | |||||| || ||||||
Sbjct 57 ACAAGAATCGATTTGGCACGAA-A-TCGAAG-A-TTTGATGAATTGTGT--AA-AACATG 109
Query 120 GCGATTCATGAAGAAATCCAGATATCAAGAACACAAGA--C-CCTTGCACTTC-CA--AT 173
|||||||||||||||| ||||||||||| ||||||||| | ||||||||||| | ||
Sbjct 110 GCGATTCATGAAGAAACCCAGATATCAACAACACAAGACCCTCCTTGCACTTCTAATGAT 169
Query 174 GCCTCGCCGTCTCAAGATCACCGGTTCGAGAAGCTTCGCGGCGTCCGATGGCGAATCAAC 233
||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 170 GCCTCGCCGCCTCAAGATCATCGGTTCGAGAAGCTTCGTGGCGTCCGATGGCGAATCAAC 229
Query 234 CTCGGAATCTTACCGTCTTCTCCTTCCTCCACCATTGATGAGCTTCGTAGAGTAACAGCT 293
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 230 CTCGGAATCTTACCGTCTTCTCCTTCCTCCACCATTGATGAGCTTCGCAGAGTAACAGCT 289
Query 294 GATTCCAGAAGAAGATATGCTGCTTTGAGAAGACGACTCTTAATTGATCCACATTTGCCT 353
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 290 GATTCCAGAAGAAGGTATGCTGCTTTGAGAAGAAGACTCTTAATTGATCCACATTTGCCT 349
Query 354 AAGAAAGGAACAAATTCTCCAGATCTAACTATTGATAATCCCTTATCACAAAATCCTGAT 413
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 350 AAGAAAGGAACAAATTCTCCAGATCTTACTATTGATAATCCTTTATCACAAAATCCTGAT 409
Query 414 AGTACTTGGGGAAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 473
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AGTACTTGGGGGAGATTCTTTCGTAATGCAGAGCTCGAGAAAACGCTTGATCAAGATCTT 469
Query 474 TCTCGGTTGTATCCAGAACATGGGAGTTACTTTCAATCCTCTGGATGTCAAGGGATG-TT 532
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 470 TCTCGGTTGTATCCAGAACATGGAAGTTACTTTCAATCCTCTGGATGTCAAGGGATGCTT 529
Query 533 AAGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 -AGAAGGATACTTCTTTTGTGGTGTTTGAAGCATCCTGAGATTGGTTATAGACAAGGGAT 588
Query 593 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GCATGAACTATTGGCTCCTTTGCTTTATGTTCTTCAAGTTGATGTGCAATATCTTACGGA 648
Query 653 AGTTAGATCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAATTAGCGTTTCAAGA 712
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGTGAGGTCAAACTATGAAGATCAGTTTGTTGATTTGTTTGACGAATTAGCGTTTCAAGA 708
Query 713 ACGTGATTCTGGAGCGTATGATTTCGATATAAAAAAGGTTTTGGATGATTCTATGGAAGA 772
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 ACGCGATTCTGGAGCTTATGATTTCGATATAAAAAAGGTTTTGGATGATTCCATGGAAGA 768
Query 773 TGAAGAAGATGGAGATGGAAATGGTTCACCCTCTGGAAGCACCAAGAAGAAAAAACCAAA 832
||||| | | || | | ||||| |||||||||||||||| |||||||||||||||||
Sbjct 769 TGAAG-A-A--GA-A--G--ATGGTCCACCCTCTGGAAGCACAAAGAAGAAAAAACCAAA 819
Query 833 GAGTTTCGATGAACTTGATACCGAGACGCAGACTGTTGTGCTGTTGAGTGATGCGTATGG 892
||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 820 GAGTTTCGATGAACTCGATACCGAGACGCAGACCGCTGTGTTGTTGAGTGATGCGTATGG 879
Query 893 AGCAGAAGGCGAATTGGGAATCGTCCTCTCTGAGAAATTCATGGAACACGACGCTTACAC 952
|| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 880 AGGAGAAGGCGAATTAGGAATCGTCCTCTCTGATAAATTTATGGAACACGACGCTTACAC 939
Query 953 AATGTTTGACGCTCTTATGTATGGTGGATCTTCCCTCGGTTCGGTTTCTGTAGCGAATTT 1012
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 940 TATGTTTGACGCTCTTATGTACGGTGGATCCTCCCTTGGTTCGGTTTCTGTAGCCAATTT 999
Query 1013 CTTTGTGTATTCCGCTCCAAACGATTCTGTCACGGGACTTCCTCCTGTGATCGAAGCTTC 1072
||| | ||||| ||||| |||||||| |||||||||| |||||||| || ||||||||
Sbjct 1000 CTTCATCTATTCTGCTCCCAACGATTCCATCACGGGACTGCCTCCTGTAATTGAAGCTTC 1059
Query 1073 TGGGGCTTTGTATCATTTACTGTCTCTAGTCGATGCTTCTCTTCACAGCCATCTCGTTGA 1132
|||||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 1060 TGGGGCATTGTATCATCTACTTTCTTTAGTTGATGCTTCTCTTCACAGCCATCTCGTTGA 1119
Query 1133 GCTCGGCGTTGAACCGCAGTACTTTGCTCTCCGTTGGCTACGGGTTTTGTTCGGGAGAGA 1192
||||| |||||||||||||||||||| || |||||| |||||||| |||| ||| ||||
Sbjct 1120 ACTCGGTGTTGAACCGCAGTACTTTGCGCTTCGTTGGTTACGGGTTCTGTTTGGGCGAGA 1179
Query 1193 GTTTCCGCTGAATAATCTATTGATTGTGTGGGATGAGATATTTTCTGCTGACAACTCCGA 1252
||||| |||| |||||||||||| |||||||||||||||||||| |||||||| || ||
Sbjct 1180 ATTTCCACTGAGTAATCTATTGATCGTGTGGGATGAGATATTTTCCGCTGACAATTCTGA 1239
Query 1253 GGTAGAGAGAGGTATTGAGGCTGATTTAGGGTTTGAATTCAGGATCCTTAGCTCTCCCCG 1312
||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||
Sbjct 1240 AGTAGAGAGAGGCGTTGAGGCTGATCTAGGGTGTGAATTCAGGATCCTTAGCTCTCCTCG 1299
Query 1313 AGGAGCTCTGGTTGCTGGCATGGCGGTTTCGATGATACTTTATCTGAGATCATCGCTGCT 1372
||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1300 GGGAGCTCTGGTCGCGGGAATGGCGGTTTCGATGATACTTTATCTTAGATCATCGCTGCT 1359
Query 1373 AGCAACTGAAAACGCGACTTCTTCTCTCAAGAAGTTGCTGAATTTTCCGGAGGACATTGA 1432
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1360 AGCAACTGAAAACGCGACTTCTTCTCTTAAGAAGTTGCTCAATTTTCCGGAGGACATTGA 1419
Query 1433 TCTGAGTAAAGTTATTGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1492
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 TCTGAGTAAAGTTATCGAAAAGGCTAAGACATTGCAGAGTCTTGCTTTGGAAATCAATGC 1479
Query 1493 TCATCGTGATTTAG-TTCCAAAAGGGTCGAGAAAACCGATGAGAGGTCACAGCTTATCAG 1551
|| ||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1480 TCGTCGTGATTT-GATTCCGAAAGGACCGAGAAAACCGATGAGAGGTCACAGCTTATCAG 1538
Query 1552 TTGATTCTATCTCACTTGGTTCTTCTCCTGTGGGAATAGTACCTGAGAGCTACTGGGAAG 1611
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1539 TTGATTCGATCTCACTTGGTTCTTCTCCTGTGGGAATAGAACCTGAGAGCTACTGGGAAG 1598
Query 1612 AGAAGTGGAGAGTTTTGAACAGTGCAGTAGAAGAAGAACGGAAGAAAAAAGCGTTGCAGA 1671
|||||||||||||||| ||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1599 AGAAGTGGAGAGTTTTAAACAGCGCAGAAGAAGAAGAACGGAGGAAAAAAGCGTTGCAGA 1658
Query 1672 GACCAAAAGCAGGGAAGAAGAGTTGGTCGGAAAGAGTGAAGCTAAGGCTTACAAGAACAG 1731
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1659 GACCAAAAGCAGGGAAGAAGAGTTGGTCGGAAAGAGTGAAGCTAAGGCTTTCAAGGACAG 1718
Query 1732 AATCCGATCCGTCACCCGCTGAAGCAAATAAAAGCGGAAACAAACCGCCTATTAGACGTA 1791
||||||||||||| |||||||||||||| | |||||| ||||| || | |||||||||||
Sbjct 1719 AATCCGATCCGTCTCCCGCTGAAGCAAAGAGAAGCGGGAACAAGCCTCATATTAGACGTA 1778
Query 1792 GTTTGCTCGATGATTTATCCCGACAACTCGGGGAAAAAGAGATTGAGCCTCCCGAGTTCC 1851
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1779 GTTTGCTCGATGATTTATCCCGACAACTAGGGGAAAAAGAGATTGAGCCTCCCGAGTTCC 1838
Query 1852 CAAACCCGGACACTGATATCGAACGCTCATCTACGGTATCTGATACTCCCAGTGCAGATT 1911
||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1839 CAAACCCAGACACCGATATCGAACGCTCATCTACAGTATCTGATACTCCCAGTGCAGAGT 1898
Query 1912 ATGAGGATAACAGTTCTGATAGAGGCAAAAGCGACAACCACACGGATCTGCCTCTTTCAA 1971
||||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||| |
Sbjct 1899 ATGAGGATAACAGTTCTGATAAAGGCAAAAGTGAGAACCACATGGATCTGCCTCTTTCTA 1958
Query 1972 TTCCTGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATCTTCAGAGAGAGGAAGATTC 2031
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1959 TCCCGGAGAACGAGCCAGAGGCGAAATCAGGGATGAATATTTTCAGAGAGAGGAAGATTC 2018
Query 2032 TTTCGGGTAAATTCCAGAGGCTATGGAGGTTAGGTAGAAACTTGTCCGGCGAAGAGACCT 2091
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2019 TTTCGGGTAAATTCCAGAGGCTATGGAGGCTAGGTAGAAACTTGTCTGGCGAAGAGACCT 2078
Query 2092 CTGAGACGAAAGAAGCTAAACAGATAGATTTTGAAGACGGAAAAACCGATTCAGATTCAA 2151
||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 2079 CTGAGACTAAAGAAGCTAAACAGGTAGATTCTGAAGACGGAAAAACCGATTCAGATTCAA 2138
Query 2152 CTGCAGGTAATGGAGATGCCTTAAAGAATACAGGAAGATCCATGCTTGAACATATCAAGG 2211
|| ||||| ||| ||| | ||||||||||||||| | ||||||||||||||||| ||||
Sbjct 2139 CTTCAGGTCCTGGCGATTCATTAAAGAATACAGGACGGTCCATGCTTGAACATATTAAGG 2198
Query 2212 TGATAGAGTCAGTGTTGGAGCTAAGTCCACCGGAGAATATGGCTGTGACTGAGAACGGAA 2271
|||||||||| ||||||||||||||| |||| ||||||||| ||| | | |||||||
Sbjct 2199 TGATAGAGTCGGTGTTGGAGCTAAGTTCACCAGAGAATATGACTG--A---A-AACGGAA 2252
Query 2272 GAA-TAACAGTTGACGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATATGTTATTGTCA 2330
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 -AACTAACAGTTGAAGAAGCTCTTAGAGAACTTCGTAGACTTGGAAATATGTTATTGTCG 2311
Query 2331 GAAATGTAAAGTTTATTGCAGACTCG--T---GTA-TT--AT-G---A--AC-A---TTC 2372
||||||||||||| |||||||||||| | ||| || || | | | | |||
Sbjct 2312 GAAATGTAAAGTTCATTGCAGACTCGGCTTACGTAATTTCATTGTGTATTATGAAAATTC 2371
Query 2373 ATTTGTCTCTAtgtgtgtatgtgtgtgtAAGAGAGAGTGT-A-ATTGTAATGTATATATG 2430
|||| ||||| |||| ||||||||| | |||||| || | | |||||||||||||||
Sbjct 2372 ATTTTTCTCT--GTGT--ATGTGTGTG-A-GAGAGACTGAGAGAGTGTAATGTATATATG 2425
Query 2431 AGAAATTTTGAAGAGGGTTTTGTTTTTCTTTTAGCAGTTTCTTCTAGTACAAGGGACTTG 2490
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 2426 AGAAATTTTGAAGAG--TTTTGTTTTTCTTTTAGCAGTTTCTTCTAGCACAAGGGACCTG 2483
Query 2491 TGTTTCTTTGGACTTTGTAAACCCTAACGGGTTTTTAACGGTTCTTAGTGACAAGAGATA 2550
||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||
Sbjct 2484 AGTTTCTTTGGACTTTGTTAGCCCTAACGGGTTTTTAACGGTTTTTAGTGACGAGAGATA 2543
Query 2551 AAA 2553
|||
Sbjct 2544 AAA 2546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127524369106
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5