BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495825
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57270.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2538 0.0
AT4G25870.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 856 0.0
> AT5G57270.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:23200614-23203792
REVERSE LENGTH=1907
Length=1907
Score = 2538 bits (1374), Expect = 0.0
Identities = 1659/1790 (93%), Gaps = 46/1790 (3%)
Strand=Plus/Plus
Query 1 TCGATTTCTTTATTTCTAAGCAAAGAGAGAGAAAACAAATCGAGGATCTGAATCGTCAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 TCGATTTCTTTATTTCTAAGCAAAGAGAGAGAAAACAAATCGAGGATCTGAATCGTCAAA 96
Query 61 AAC--TAC----TTTTGTATGTTCTTCATTGA-AACACATTAATATAATTATTGCAAAAG 113
|| ||| |||||||||||||||||| | |||||||||||||| ||||| ||||||
Sbjct 97 CACTTTACTTTGTTTTGTATGTTCTTCATT-ACAACACATTAATATACTTATTCCAAAAG 155
Query 114 CCaaaaaaaaaaaTCTAACAC--TCTCATTATCTTTCTCTTGACTCTTTGATGTAAAGAA 171
| ||| |||||| ||||| |||| ||||||||||||| |||||||||| |||||||
Sbjct 156 -C---AAACAAAATCCAACACTGTCTCGTTATCTTTCTCTTCACTCTTTGATATAAAGAA 211
Query 172 GAAGATCATCAAAGCTTTCATTTTTGAGATCTGGGCTTCAGACAAAGATTC---tttttt 228
| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 212 G--GATCATCAAAGCTTTCA-TTTTGAGATCTGGGC-TCAGACAAAGATTCTTTTTTTTT 267
Query 229 t-ttCTCTCCCCAGCTCCAAATTCTCAGGT-AA-CTGTAATAACTCTCGTACGTGCGGGT 285
| ||||||||||||||||||||||||| || || | |||| |||||||||||| ||||
Sbjct 268 TATTCTCTCCCCAGCTCCAAATTCTCA-GTGAAGC-ATAATTGCTCTCGTACGTGGGGGT 325
Query 286 TTTGCTCAATGTAAAGAAGTTAAAGATTCAACCATTTTATGGGAGAA--ACACAGAACCT 343
||||||||||||||||||||||||||||||| | |||| | | || | |||| ||
Sbjct 326 TTTGCTCAATGTAAAGAAGTTAAAGATTCAAAC-TTTTTTTTCACAATGGGAGAGAATCT 384
Query 344 GCATTTGTCTCCGCGACACCGATCTTCTCTAAAGAAGCCATTGTTGATTGTTTTGTTAGT 403
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GCATTTGTCTCCACGACACCGATCTTCTCTAAAGAAGCCATTGTTGATTGTTTTGTTAGT 444
Query 404 CTGTATCACAAGTGTGCTTTTGGTGATCACTTACATGTATCCACAGCACAATG---GTAA 460
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 445 CTGTATCACAAGTGTGCTTTTGGTGATCACTTACATGTATCCACAACACAACAACAGTAA 504
Query 461 CAGCTCTGCGTGTGCGGGTTTGTCTAGTAGAGGCTGTGAAGCGGCGCTTTCGGGATGGCT 520
|||||||| ||||||||||||||||||||||||||| |||| ||||| || ||||||||
Sbjct 505 GAGCTCTGCTTGTGCGGGTTTGTCTAGTAGAGGCTGTCAAGCTGCGCTCTCTGGATGGCT 564
Query 521 TCCTGTTCATGTGAGGAAATTTACGGATGAAGAAGTAGCAGCTCGAGTTGTGATCAAAGA 580
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 565 TCCTGTTCATGTCAGGAAATTCACTGATGAAGAAGTAGCAGCTCGAGTTGTGATCAAAGA 624
Query 581 TATTCTGAGACTACCTCCTGCTCTAACCGCTAAATCGAAAATCGCTTTTATGTTCTTGAC 640
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 625 TATACTGAGACTACCTCCTGCTCTAACCGCTAAATCGAAAATCGCTTTTATGTTTTTGAC 684
Query 641 TCCTGGTACTTTGCCATTTGAGAAGCTTTGGGATAAGTTTTTCCAGGGTCAAGAAGGAAG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TCCTGGTACTTTGCCATTTGAGAAGCTTTGGGATAAGTTTTTCCAGGGTCAAGAAGGAAG 744
Query 701 ATTCTCTATTTACATCCACCCATCAAGGTTACGACCAGTTCACATTAGCCGTCACTTTTC 760
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 745 ATTCTCTATTTACATCCACCCTTCCAGGTTACGACCAGTTCACATTAGCCGTCACTTTTC 804
Query 761 AGACCGTGAGATTCACAGCGATCATGTCACTTGGGGAAGGATTTCTATGGTTGATGCCGA 820
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 805 AGACCGTGAAATTCATAGTGATCATGTCACTTGGGGAAGGATTTCTATGGTTGATGCTGA 864
Query 821 GAAACGGCTTCTAGCAAACGCTCTTGAAGATCCTGACAACCAACACTTTGTTCTTCTTTC 880
|| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 865 GAGACGGCTTCTAGCAAATGCTCTTGAAGATCCTGATAACCAGCACTTTGTTCTTCTTTC 924
Query 881 AGAAAGTTGTATACCGTTGCATACATTTGACTATACCTATCGATATTTGATGCACGCAAA 940
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 925 AGAAAGTTGTATACCGTTGCATACATTTGACTACACCTATCGATATTTGATGCACGCAAA 984
Query 941 TGTCAGCTTCATTGATAGTTTTGAGGATCTTGGTCCTCACGGGACTGGCAGACACATGGA 1000
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 985 TGTCAGCTTCATTGATAGTTTTGAGGATCTTGGTCCTCATGGGACTGGCAGACACATGGA 1044
Query 1001 TCACATGTTACCTGAGATCCCAAGGCAAGATTTCAGAAAGGGTGCACAGTGGTTCACAAT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TCACATGTTACCTGAGATCCCAAGGCAAGATTTCAGAAAGGGTGCACAGTGGTTCACAAT 1104
Query 1061 GAAGCGTCAGCACGCTGTAATAGTGATGGCTGATGGTCTCTACTACTCGAAATTCCGGGA 1120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GAAGCGTCAACACGCTGTAATAGTGATGGCTGATGGTCTCTACTACTCGAAATTCCGGGA 1164
Query 1121 GTATTGCAGACCCGGGGTAGAAGCAAACAAGAACTGCATCGCAGATGAACATTACCTGCC 1180
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1165 GTATTGCAGACCTGGAGTAGAAGCAAACAAGAACTGCATCGCGGATGAACATTACCTGCC 1224
Query 1181 AACATTCTTCCATATGCTTGATCCTGGAGGAATCTCGAACTGGTCAGTCACATATGTTGA 1240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 AACATTCTTTCATATGCTTGATCCTGGAGGAATCTCGAACTGGTCAGTCACATATGTTGA 1284
Query 1241 TTGGTCTGAGCGTAGATGGCATCCAAAGACATACAGAGCACGCGATGTCTCACTCAAGCT 1300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1285 TTGGTCTGAGCGTAGATGGCATCCAAAGACATATAGAGCACGCGATGTCTCACTCAAGCT 1344
Query 1301 CTTGAAAAATATCACGTCCGATGACATGAGTGTACATGTAACAAGCGTTGGCAAGCGCGG 1360
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1345 CTTGAAAAATATCACGTCTGACGACATGAGTGTACATGTAACAAGCGTTGGCAAGCGCGG 1404
Query 1361 AGAAGAGCTGCATTGGCCTTGTACATGGAAGGGAATTAGACGTCCATGTTATCTATTCGC 1420
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1405 AGAAGAGCTGCGTTGGCCTTGTACATGGAAGGGAATTAGACGACCATGTTATCTATTTGC 1464
Query 1421 AAGGAAGTTTCACTCAGATGCTCTTTACAAACTGGTCAGACTCTTTCCAAACTACACGAG 1480
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1465 AAGGAAGCTTCACTCAGATGCTCTTTACAAACTGGTCAGACTCTTTCCAAATTACACAAG 1524
Query 1481 CTCAGTGGTCTGAGCCAGAAACAAATTCTTGAAACCAAACCATACAATTCTTGAAACCGG 1540
| ||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1525 CACAGTGGTCTAAGCCAGAGACAAATTCTTGAAACTAAACCATACGATTCTTGAAACCGG 1584
Query 1541 AACAAAACACTTCCACATAT-CTCGAGATTGGATCGCAGATT-ACTGTAAATTTCTGCTT 1598
||| ||||||||||| |||| | ||||||||||||||| ||| ||||||||||| |||||
Sbjct 1585 AACTAAACACTTCCAGATATGC-CGAGATTGGATCGCA-ATTTACTGTAAATTTTTGCTT 1642
Query 1599 TCTCTTGCTGGGGTTTAGTG-CTCTTTAATGGGACATGTTACTCTGCTTTTATTAAGGTT 1657
|||||||||| | ||||||| ||||||| |||| |||||| ||||||||||||||
Sbjct 1643 TCTCTTGCTGAGATTTAGTGTCTCTTTA------CATGGTACTCTACTTTTATTAAGGTT 1696
Query 1658 TAGTATAAGAACAAAATTAGAAGCAGAGGTTTTT-G-TCTAAGGAGAGTTTTGGTTTTTG 1715
||||||||||| ||| ||||||||||| ||||| | || |||||||| ||||||| | |
Sbjct 1697 TAGTATAAGAAGAAAGTTAGAAGCAGAAATTTTTTGGTC-AAGGAGAGATTTGGTTATCG 1755
Query 1716 TGATTTTAGCCATTGTTTGGTTAGTGTTAACCGGTGTATGTTGTTGTAAA 1765
||||||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 1756 TGATTTTAGCCATTGTTCGGTTAGTGTTAAGCGGTATATGTTGTTGTAAA 1805
> AT4G25870.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:13149691-13152277
REVERSE LENGTH=1513
Length=1513
Score = 856 bits (463), Expect = 0.0
Identities = 855/1039 (82%), Gaps = 48/1039 (5%)
Strand=Plus/Plus
Query 516 TGGCTTCCTGTTCATGTGAGGAAATTTACGGATGAAGAAG-TAGCAGCTCGAGTTGTGAT 574
||||| ||||||||||| |||||||| || |||| || || |||||||||||| ||| |
Sbjct 396 TGGCTACCTGTTCATGTCAGGAAATTCACTGATG-AGGAGATAGCAGCTCGAGCAGTGGT 454
Query 575 CAAAGATATTCTGAG-ACTACCT-CCTGCTC-TAACCGCTAAATCGAAAATCGCTTT-TA 630
| ||| || || || || ||| ||| || ||||| ||| || ||||||||||| |
Sbjct 455 TAGAGACATACTAAGAAC-GCCTCCCT--TCATAACCAATAACTCCAAAATCGCTTTCT- 510
Query 631 TGTTCTTGACTCCTGGTACTTTGCCATTTGAGAAGCTTTGGGAT-AAGTTTTTCCAGGGT 689
||||||||||||| ||||||||||||||||||||||| |||||| || |||||| |||||
Sbjct 511 TGTTCTTGACTCCCGGTACTTTGCCATTTGAGAAGCTCTGGGATGAA-TTTTTCAAGGGT 569
Query 690 CAAGAA-GGAAGATTCTCTATTTACATCCACCCATC-AAGGTTACGACCAGTTCACATTA 747
|| ||| |||| |||||| || || |||||||| || |||| ||||||||||||||| |
Sbjct 570 CATGAAGGGAA-ATTCTCGATATATATCCACCCGTCAAAGG-AACGACCAGTTCACATCA 627
Query 748 GCCGTCACTTTTCAGACCGTGAGATTCACAGCGATCATGTCACTTGGGGAAGGATTTCTA 807
||||||||||||| || || ||||||||||| ||| | || |||||||||||||||||||
Sbjct 628 GCCGTCACTTTTCTGATCGAGAGATTCACAGTGATGAGGTTACTTGGGGAAGGATTTCTA 687
Query 808 TGGTTGATGCCGAGAAACGGCTT-CTAGCAAACGCTCTTGAAGATCCTGACAACCAACAC 866
|||||||||| ||||| ||| || || | | ||||||||||||||||||||||||||||
Sbjct 688 TGGTTGATGCTGAGAAGCGG-TTACTGGTTAGCGCTCTTGAAGATCCTGACAACCAACAC 746
Query 867 TTTGTTCTTCTTTCAGAAAGTTGTATACCGTTGCATACATTTGACTATACCTATCGATAT 926
||||||||| ||||||| |||||||| ||||||||||| |||||||| || ||| |||||
Sbjct 747 TTTGTTCTTGTTTCAGAGAGTTGTATTCCGTTGCATACTTTTGACTACACTTATAGATAT 806
Query 927 TTGATGCACGCAAATGTCAGCTTCATTGATAGTTTTGAGGATCTTGGTCCTCACGGGACT 986
||| || || | || || ||||||||||| ||||||| ||||| ||||| || || ||
Sbjct 807 TTGTTGTACTCCAACGTTAGCTTCATTGAGAGTTTTGTGGATCCGGGTCCACATGGAACC 866
Query 987 GGCAGACACATGGATCACATGTTACCTGAGATC-CCAAGGCAAGATTTCAGAAAGGGTGC 1045
|| ||||| ||||| ||||||||||| || ||| |||||| ||||||| |||||||||||
Sbjct 867 GGTAGACATATGGAACACATGTTACCAGAAATCGCCAAGG-AAGATTTTAGAAAGGGTGC 925
Query 1046 ACAGTGGTTCACAATGAAGCGTCAGCACGCTG-TAATAGTGATGGCTGATGGTCTCTACT 1104
|||||||||||||||||||| || ||||| | | ||||||||||| |||||||| ||||
Sbjct 926 TCAGTGGTTCACAATGAAGCGACAACACGC-GATTATAGTGATGGCCGATGGTCTTTACT 984
Query 1105 ACTCGAAATTCCGGGAGTATTGCAGACCCGGGGTAGAAGCAAACAAGAACTGCATCGCAG 1164
|||| |||||||| |||||||| |||| || |||| || ||||||||||||| || |
Sbjct 985 ACTCAAAATTCCGCGAGTATTGTGGACCTGGAATAGAGGCCGACAAGAACTGCATTGCCG 1044
Query 1165 ATGAACATTACCTGCCAACATTCTTCCATATGCTTGATCC--TGGAGGAATCTCGAACTG 1222
||||||||||| |||||||||||||| ||||| ||||||| ||| ||| |||| || ||
Sbjct 1045 ATGAACATTACTTGCCAACATTCTTCAATATGATTGATCCCATGG-GGA-TCTCAAATTG 1102
Query 1223 GTCAGTCACATATGTTGATTGGTCTGAGCGTAGATGGCATCCAAAGACATACAGAGCA-- 1280
|||||| || | ||||||||||||||| || || |||||||||||||||||| ||| |
Sbjct 1103 GTCAGTGACGTTTGTTGATTGGTCTGAACGAAGGTGGCATCCAAAGACATACGGAGGAAA 1162
Query 1281 CGCGATGTCTCACTC-AAGCTCTTGAAAAATATCACGTCCGATGACATGAGTGTACATGT 1339
|| ||| | ||| | || | | ||||||| |||| ||||| |||||||||||||||||
Sbjct 1163 CGAGAT-T-TCATTAGAATTTAT-GAAAAATGTCACATCCGAGGACATGAGTGTACATGT 1219
Query 1340 AACAAGCGTTGGCAAGCGCGGAGAAGAGCTGCATTGGCCTTGTACATGGAA-GGGAATTA 1398
|| || || || |||| ||||| |||||||||||||||||||||||||| |||| |||
Sbjct 1220 CACCAGTGTGGGGAAGCATGGAGATGAGCTGCATTGGCCTTGTACATGGAACGGGA-TTA 1278
Query 1399 GACGTCCATGTTATCTATTCGCAAGGAAGTTTCACTCA-GATGCTCTTTACAAACTGGTC 1457
||| || || |||||||| ||||| ||||| || || ||| |||| ||| | |||||
Sbjct 1279 AACGGCCTTGCTATCTATTTGCAAGAAAGTTCCA-TCCTGATACTCTCGACACATTGGTC 1337
Query 1458 AGAC-TCTTTCCAAACTACACGAGCTCAG-TGGTCTGAGCCAGAAACAAATTCTTGAAAC 1515
| || |||| ||||||||||| | | ||| || |||||| ||| | |||||||| |
Sbjct 1338 A-ACCTCTTCCCAAACTACACAAACACAGCTG-TCTGAG--AGAGG-A--TTCTTGAA-C 1389
Query 1516 CAAAC-CATACAATTCTTG 1533
||||| || ||| ||||||
Sbjct 1390 CAAACACACACA-TTCTTG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88101956475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5