BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495827
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57280.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1395 0.0
> AT5G57280.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:23204461-23206659
FORWARD LENGTH=1116
Length=1116
Score = 1395 bits (755), Expect = 0.0
Identities = 886/949 (93%), Gaps = 10/949 (1%)
Strand=Plus/Plus
Query 1 TTTAGCTCGAGAAGCTAATAATGTCAAATCGACCTGAGTTACTCGCTCCGCCGGAGATAT 60
||| |||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 53 TTTTGCTCTAGACGCTAATTATGTCAAATCGACCTGAGTTACTCGCACCGCCGGAGATAT 112
Query 61 TCTATGACGAAACCGAAGCTCGGAAGTATACTTCTTCCTCTCGTATCGTCGAAATTCAGG 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 TCTATGACGATACCGAAGCTCGGAAGTATACTTCTTCCTCTCGTATCGTCGAAATTCAGG 172
Query 121 CGAAGCTATCAGAGAGAGCTTTGGAGCTTCTTGCTTTGCCAGAGGATGGTGTTCCTAGAT 180
||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 173 CGAAGTTATCAGAGAGAGCTTTGGAGCTTCTGGCTTTACCCGAGGATGGTGTTCCTAGAT 232
Query 181 TCTTACTCGACATTGGTTGTGGATCTGGCCTGAGTGGGGAAACACTTTCTGAAAACGGTC 240
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
Sbjct 233 TCTTACTCGACATTGGTTGTGGATCTGGATTGAGTGGAGAAACACTTTCTGAAGACGGGC 292
Query 241 ATCATTGGATTGGTTTAGATATTTCAGCCTCAATGCTTAACGTAGCTGTGGAACGAGAAG 300
||||||||||||||||||| |||||||||||||||||| | || |||||||| |||||||
Sbjct 293 ATCATTGGATTGGTTTAGACATTTCAGCCTCAATGCTTCATGTTGCTGTGGAGCGAGAAG 352
Query 301 TTGAGGGTGATCTTTTACTTGGTGACATGGGCCAGGGAC-TAGCTCTTCGTTCTGGAGTT 359
||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||
Sbjct 353 TTGAGGGTGATCTTTTACTTGGTGACATGGGGCAGGG-CTTAGGTCTTCGTTCTGGAGTT 411
Query 360 ATTGATGGAGCCATCAGTATTTCAGCTGTTCAGTGGTTATGCAATGCGGATAAGTCATCC 419
||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 412 ATTGACGGAGCCATCAGTATATCGGCTGTTCAGTGGTTATGCAATGCGGATAAGTCATCG 471
Query 420 CATGAACCTCGTTTAAGGCTAAAGGCTTTCTTTGGCTCACTATACCGCTGCTTGTCAAGA 479
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 472 CATGAACCTCGTTTGAGGCTAAAGGCTTTCTTTGGTTCACTATACCGCTGCTTATCAAGA 531
Query 480 GGAGCAAGGGCAGTTTTTCAAGTGTACCCTGAGAATATTGCTCAGCGTGAATTGATTCTT 539
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 532 GGAGCAAGAGCAGTTTTTCAAGTGTACCCTGAAAATATTGCTCAGCGTGAATTGATTCTT 591
Query 540 CGCCAGGCCTTACAAGCTGGATTTGGAGGTGGACTTGTTGTTGACTATCCACACAGTACT 599
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 592 CGCCAGGCCTTACAAGCTGGATTTGGCGGTGGACTTGTTGTTGACTATCCACACAGTACT 651
Query 600 AAGAAAAGAAAAGAGTTCTTGGTCCTCACATGTGGTC-CTGTTCAGACCAGCATTCAAAC 658
||||||||||||||||||||||||||||||||||| | |||||||||| || ||||| ||
Sbjct 652 AAGAAAAGAAAAGAGTTCTTGGTCCTCACATGTGG-CACTGTTCAGACGAGTATTCAGAC 710
Query 659 CAGTAAGAATGAGTATGATGAGAGTTGCTCAGAAGATGACAATAGCGAAGATGAAGAGAA 718
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 711 CAGTAAAAATGAGTATGATGAGAGTTGCTCAGAAGATGACAACAGCGACGATGAAGAGAG 770
Query 719 TGGAGAGGTGGGTGTATCAGATAGGAATAGGCCAAGGAAAAAGCGGAGAACGAACAA-AC 777
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 771 TGAAGAGGTGGGTGTATCAGATAGGAATAGGCCAAGGAAAAGGCAGAGAACGAACACGA- 829
Query 778 aagggaaaggaagagaatgggttctgaagaagaaagagcaaagtagaagaaaaggaaaCA 837
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 830 AAGTGAAAGGAAGAGAATGGGTTCTGAGGAAGAAAGAGCAAAGTAGAAGAAAAGGAAAAA 889
Query 838 ATGTTCCTGCTGACTCCAAGTACACC-GCTAGAAAACGCAAGTCGCGTTTCTAGTTTTGT 896
||||||||||||||||||||| |||| | ||||||||||| | |||||||||||||||||
Sbjct 890 ATGTTCCTGCTGACTCCAAGTTCACCAG-TAGAAAACGCAGGACGCGTTTCTAGTTTTGT 948
Query 897 TAAGGAGACGTAAACGCTAGTTTAGAGCGTTTTAAAAGTTTTGACATTA 945
|| | | || |||||||||||| |||||||||||||||||||| |||||
Sbjct 949 TATG-ATACCTAAACGCTAGTT-AGAGCGTTTTAAAAGTTTTGTCATTA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5