BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495829
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57300.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1663 0.0
AT5G57310.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 76.8 4e-13
> AT5G57300.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:23208561-23211090
REVERSE LENGTH=1138
Length=1138
Score = 1663 bits (900), Expect = 0.0
Identities = 1071/1148 (93%), Gaps = 33/1148 (3%)
Strand=Plus/Plus
Query 1 CAAACTTTTTGGTCGGTTCCCGGCACCGACGTGTCCT-GCAAGAACAAATAC-T-T-ATA 56
|||||||||||||||||||||||||||||||||| || |||||||| || || | | |||
Sbjct 1 CAAACTTTTTGGTCGGTTCCCGGCACCGACGTGT-CTGGCAAGAAC-AACACGTGTGATA 58
Query 57 CAACACTCGATCTCCGAGCTGTGAGTCGACGAAATTTGGA-T---C--CTTTTACTGT-A 109
|| ||||||||||| |||| ||| | | | | |||||| | | | | || | |
Sbjct 59 CATCACTCGATCTCAGAGC--TGA-AC-A-G-AGTTTGGAGTAGACGAC-TATAATTTCT 111
Query 110 ATTTCTATTAAGAGCTATGGCATTACGATCAGTAAGCAGGAGGCTCGGGAGCAGAATTTT 169
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 112 GTTTCTATTGAGAGCTATGGCACTACGATCAGTAAGCAGGAGGCTCGGGAGCAGAATTTT 171
Query 170 GAATCATCGTTCCTTTGTTGCTTCGCTTCATTCTCATGCCACAAGTTTTGGGTTTCAAGA 229
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 172 GAATCAACGTTCCTTTGTTGCTTCGCTTCACTCTCATGCCACAAGTTTCGGGTTTCAAGA 231
Query 230 AGTAAAGGAAGAAGAGAAAAGCAAATTGGTTGGTAATGTATTCACCAATGTAGCTTCGAG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGTAAAGGAAGAAGAGAAAAGCAAATTGGTTGGTAATGTATTCACCAATGTAGCTTCGAG 291
Query 290 TTATGATATTATGAATGATGTCATGAGTGGTGGCTTGCACAGGCTATGGAAGGAAAGACT 349
||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 292 TTATGATATTATGAATGATGTGATGAGTGGTGGTTTGCATAGGCTATGGAAGGAAAGACT 351
Query 350 CGTTGGGAAGCTAAGTCCATTTGCTGGGATGAAGCATCTTGATGTGGCCGGTGGAACAGG 409
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 352 CGTTGGGAAGCTAAGTCCATTTGCAGGGATGAAGCATCTTGATGTGGCCGGAGGAACAGG 411
Query 410 TGATGTTGCGTTTAGGATCTATGATGCTGTTTACAGTGTCAAACGAAGAGCATTGCAGAA 469
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TGATGTTGCTTTTAGGATCTATGATGCTGTTTACAGTGTCAAACGAAGAGCATTGCAGAA 471
Query 470 AGTTGATGAGACTTCTCTTGAGGAAACTCAGATATACGTATGTGACATTAATCCTAACAT 529
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AGTTGATGAGGCTTCTCTTGAGGAAACTCAGATATACGTATGTGACATTAATCCTAACAT 531
Query 530 GTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGGTCTAAGAGATAACAAATCACTCGT 589
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 532 GTTAAACGTTGGGAAACAACGAGCTGCTGAGAGAGGTCTAAGAGATAACAAGTCACTCGT 591
Query 590 ATGGGTCGAAGGAGATGCAGAGGCCTTGAGTTTCGATGACAATTCAATGGATGGATACAC 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATGGGTCGAAGGAGATGCAGAGGCCTTGAGTTTCGATGACAATTCAATGGATGGATACAC 651
Query 650 TATTGCATTTGGCATAAGGAATGTCACACACATTGAAAAGGCTCTCGCAGAGGCTTATAG 709
||||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 652 CATTGCATTTGGAATAAGGAATGTCACACACATCGAAAAGGCTCTAGCTGAGGCTTATAG 711
Query 710 GGTACTAAAACGGGGAGGAAGATTCTTGTGCCTCGAGCTCAGCCATGTAGAAATTCCGAT 769
|||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 712 GGTACTCAAACGGGGAGGAAGATTTTTGTGCCTTGAGCTCAGCCATGTAGAAATTCCGGT 771
Query 770 TTTCAAAAATCTATACGATTTGTATTCTTTCCAGGTCATTCCAAACTTAGGGGAACTAAT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTTCAAAAATCTATACGATTTGTATTCTTTCCAGGTCATTCCAAACTTAGGGGAACTAAT 831
Query 830 CGCCGGGGACAGGGAATCCTATCAGTACTTGGTTGAGAGCGTTCGTCGGTTTCCCCCTCA 889
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 832 CGCCGGGGACAGGGAATCTTATCAGTACTTGGTTGAGAGCGTTCGTCGGTTTCCCCCTCA 891
Query 890 GGAGCGATTTGCATCGATGATAGCAGACGCAGGATTTGAGAAGGTGGAGTACGAGAACCT 949
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 892 GGAGCGATTTGCATCAATGATCGCAGATGCAGGATTTGAGAAGGTGGAGTACGAGAACCT 951
Query 950 TGTTGGTGGAGTTGTCGCCATTCACTCTGCCATAAAGCTCTGACTTTGTT---C-TTAAC 1005
||||||||||||||||||||||||||||||||||||||||||||||| || | || |
Sbjct 952 TGTTGGTGGAGTTGTCGCCATTCACTCTGCCATAAAGCTCTGACTTTTTTTTTCCTTCTC 1011
Query 1006 TTTTGCTTCTGCTGTTTCAAAACCCAAACTGTAAAAGTTGGTAGGTAA--TAAGGCTCTG 1063
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1012 TTTTGCTTCAGCTGTTTCAAAACCCAAACTGTAAAAGTTGGTAGGTAAAATAAGGCTCTG 1071
Query 1064 CTTAAGAGCGAACTTACTACAAAACTGTTGATTCCC-CTCCACTTTTGATGAAATTTTGT 1122
||||||||| ||||||| |||||||||||||| || | |||||| ||||||||||
Sbjct 1072 CTTAAGAGC----TTACTACTTAACTGTTGATTCCCACT--ATTTTTGAGGAAATTTTGT 1125
Query 1123 TGATTTTA 1130
||||||||
Sbjct 1126 TGATTTTA 1133
> AT5G57310.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:23211030-23211620 FORWARD LENGTH=309
Length=309
Score = 76.8 bits (41), Expect = 4e-13
Identities = 46/48 (96%), Gaps = 2/48 (4%)
Strand=Plus/Minus
Query 1 CAAACTTTTTGGTCGGTTCCCGGCACCGACGTGTCCTG-CAAGAACAA 47
||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 CAAACTTTTTGGTCGGTTCCCGGCACCGACGTGTC-TGGCAAGAACAA 15
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5