BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495830
Length=2937
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57320.1 | Symbols: VLN5 | villin, putative | chr5:23212690-... 3066 0.0
> AT5G57320.1 | Symbols: VLN5 | villin, putative | chr5:23212690-23217549
FORWARD LENGTH=2889
Length=2889
Score = 3066 bits (1660), Expect = 0.0
Identities = 1830/1912 (96%), Gaps = 12/1912 (1%)
Strand=Plus/Plus
Query 1 ATGACGTTTTCCATGAGAGATTTAGATCAGGCTCTTCAAGGAGCTGGCCAGAAATCCGGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGTTTTCCATGAGAGATTTAGATCAGGCTCTTCAAGGAGCTGGCCAGAAATCCGGG 60
Query 61 ATTGAAATATGGCGCATCGAGAACTTCAAACCTGTCACTGTTCCAAAAGAGTCTCATGGT 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATTGAAATATGGCGCATCGAGAACTTCAAACCTGTCACTGTTCCACAAGAGTCTCATGGG 120
Query 121 AGATTTTTCACCGGGGATTCCTATATAGTCTTAAAGACCACAGCGTCAAGAAGCGGTTCC 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAATTTTTCACCGGGGATTCCTATATAGTCTTAAAGACCACAGCGTCAAGAAGCGGTTCT 180
Query 181 TTGCATCACGATATTCACTACTGGCTTGGTAAAGATTCCAGCCAGGATGAAGCCGGTGCA 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 181 TTGCATCATGATATTCACTACTGGCTCGGTAAAGATTCCAGCCAGGATGAAGCAGGTGCT 240
Query 241 GTAGCTGTTATGACAGTTGAATTAGATTCAGCATTAGGTGGGCGTGCTGTTCAGTACCGA 300
||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTAGCCGTCATGACTGTTGAATTAGATTCAGCATTAGGTGGACGTGCTGTTCAGTACCGA 300
Query 301 GAAGTACAGGGTCATGAAACGGAGAAGTTTCTTTCCTACTTCAAACCTTGCATAATACCT 360
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGTACAGGGTCACGAAACCGAGAAGTTTCTTTCCTACTTCAAACCTTGCATAATACCT 360
Query 361 CAAGAAGGTGGAGTTGCTTCCGGGTTCAACCATGTAAAACCCGAGGAGCATCAGACGCGT 420
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CAAGAAGGTGGAGTTGCTTCAGGGTTCAACCATGTAAAGCCCGAGGAGCATCAGACGCGT 420
Query 421 CTGTATATCTGCAAAGGCAAACATGTCGTCC--G-T------GTTCCGTTTGTTCGATCG 471
||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 421 CTGTATATCTGCAAAGGCAAACATGTCGTCCGTGTTAAAGAGGTTCCGTTTGTTCGATCG 480
Query 472 ACTCTCAACCACGAAGACGTTTTCATTCTTGATACAGAGTCTAAAATTTTTCAATTCAAT 531
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 481 ACTCTCAACCACGAAGACGTTTTTATTCTTGATACAGAGTCTAAAATTTTTCAATTCAGT 540
Query 532 GGTTCCAAATCGAGTATTCAAGAAAGAGCAAAAGCTCTTGAGGTTGTTCAGTACATTAAA 591
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTTCCAAGTCGAGTATTCAAGAAAGAGCAAAAGCTCTTGAGGTTGTTCAGTACATTAAA 600
Query 592 GACACTTACCATGATGGAAAATGCGATATCGCAGCTGTTGAGGATGGGAGGATGATGGCT 651
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACACTTACCATGATGGAAAGTGCGATATCGCAGCTGTTGAGGATGGGAGGATGATGGCT 660
Query 652 GATGCTGAAGCTGGAGAGTTTTGGGGCTTGTTTGGTGGGTTTGCTCCTCTTCCTAAGAAA 711
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GATGCTGAAGCTGGAGAGTTTTGGGGCTTGTTTGGTGGGTTTGCTCCGCTTCCTAAGAAA 720
Query 712 CCAGCAGTCAATGATGACGAAACCGCTGAATCTGATGGGATCAAACTCTTCAGTGTCGAT 771
|||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 721 CCAGCAGTCAATGATGACGAAACCGCTGCATCTGATGGTATCAAACTTTTCAGTGTCGAG 780
Query 772 AAGGGAAAGACAGATGCCGTAGAGGCTGAGTCTTTGACGAAAGAACTTCTGGACACTAAC 831
|||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 781 AAGGGACAGACAGATGCCGTAGAGGCTGAGTGTTTGACGAAAGAGCTTCTGGACACTAAC 840
Query 832 AAATGTTATATTCTCGATTGCGGTCTTGAATTGTTCGTTTGGAAGGGAAGAAATACTTCA 891
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 841 AAATGTTATATTCTCGATTGCGGTCTTGAATTGTTCGTTTGGAAGGGACGAAGTACTTCA 900
Query 892 ATCGACCAAAGAAAGAACGCAACTGAAGCTGCAGAAGAATTTTTCCGCTCGTCTGAACCG 951
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 ATCGACCAAAGAAAGAGCGCAACTGAAGCTGCAGAAGAATTTTTCCGTTCGTCTGAACCG 960
Query 952 CCAAAATCAAACCTGGTCAGTGTGATGGAAGGGTATGAAACAGTGATGTTCCGATCTAAG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CCAAAATCAAACCTGGTCAGTGTGATGGAAGGGTATGAAACAGTGATGTTCCGATCTAAG 1020
Query 1012 TTTGATTCATGGCCGGCTTCAAGTACCATAGCTGAACCCCAGCAAGGCAGAGGCAAAGTC 1071
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1021 TTTGATTCATGGCCGGCTTCAAGTACCATAGCTGAGCCCCAACAAGGCAGAGGCAAAGTC 1080
Query 1072 GCAGCTCTTTTGCAGCGGCAAGGAGTTAACGTTCAAGGCCTGGTTAAGACTTCTTCTTCT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCAGCTCTTTTGCAGCGGCAAGGAGTTAACGTTCAAGGCCTGGTTAAGACTTCTTCTTCT 1140
Query 1132 TCT---AAAGACGAACCGAAGCCATACATTGACGGTACAGGAAATCTCCAGGTCTGGCGA 1188
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 TCTTCTAAAGACGAACCGAAGCCATACATTGATGGTACAGGAAATCTCCAGGTCTGGCGA 1200
Query 1189 ATCAATTGTGAAGAAAAGACCCTTCTCGAGGCAGCAGAGCAATCAAAGTTCTATAGCGGT 1248
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1201 ATCAATTGTGAAGAAAAGATCCTTCTCGAAGCAGCAGAGCAATCAAAGTTCTATAGCGGG 1260
Query 1249 GATTGTTATATATTCCAATACTCATATCCAGGAGAAGACAGAGAGGAACATCTAGTGGGT 1308
|||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1261 GATTGTTATATACTCCAGTACTCATACCCAGGAGAAGACAGAGAGGAACATCTAGTGGGT 1320
Query 1309 ACTTGGTTTGGCAAGCAAAGCGTCGAGGAAGACAGAGCATCCGCTCTTTCCATGGCAAAC 1368
||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||
Sbjct 1321 ACTTGGTTTGGCAAGCAAAGCGTTGAGGAAGACAGAGCATCTGCTATTTCTTTGGCAAAC 1380
Query 1369 AAGATGGTTGAATCCATGAAGTTTATGCCGGCTCAGGCTCGCATTTACGAGGGAAAAGAG 1428
|||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 1381 AAGATGGTTGAATCCATGAAGTTTGTGCCGGCTCAGGCTCGCATTAATGAGGGAAAAGAG 1440
Query 1429 CCAATTCAGTTTTTTGTGATCATGCAAAGCTTCATCACATTTAAGGGTGGTCTAAGTGAG 1488
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1441 CCAATTCAGTTTTTTGTGATCATGCAAAGCTTCATCACATTTAAGGGTGGTGTAAGTGAT 1500
Query 1489 GCTTTCAAAAAGTACATTGCAGAAAACGAAATCCCTGATACTACTTATGAAGCAGAAGGT 1548
||||||||||||||||| || || ||||| ||||||||||||||||| ||||||||||||
Sbjct 1501 GCTTTCAAAAAGTACATAGCTGAGAACGACATCCCTGATACTACTTACGAAGCAGAAGGT 1560
Query 1549 GTTGCGTTGTTTCGGGTTCAAGGTTCTGGACCCGAGAACATGCAAGCCATACAGATAGAA 1608
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 GTTGCACTGTTTCGGGTTCAAGGTTCTGGACCCGAGAACATGCAAGCCATACAGATAGAA 1620
Query 1609 GCAGTTTCCACAGGACTAAATTCTTCACACTGTTATATATTACACGGTGATTCTACTGTT 1668
|| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1621 GCGGCTTCCGCAGGACTAAATTCTTCGCACTGTTATATATTACACGGTGATTCTACTGTT 1680
Query 1669 TTCACTTGGTGTGGCAATCTGACTTCCTCGGATGATCAAGAACTTATGGAAAGAATGTTG 1728
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1681 TTCACTTGGTGTGGCAATCTTACTTCCTCGGAAGATCAAGAACTTATGGAAAGAATGTTG 1740
Query 1729 GATTTGATTAAGCCAAATGAACCCACTAAGGCACAAAAGGAAGGTTCAGAGTCTGAACAT 1788
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1741 GATTTGATTAAGCCAAATGAACCCACTAAGGCACAAAAGGAAGGCTCAGAGTCTGAACAG 1800
Query 1789 TTTTGGGAATTATTAGGAGGCAAATCAGAATATCCGAGCCAAAAGATCAAAAAGGATGGA 1848
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1801 TTTTGGGAATTATTAGGAGGCAAATCAGAATATCCGAGCCAAAAGATCAAAAGGGATGGA 1860
Query 1849 GAGAGTGATCCTCATCTCTTCTCTTGCACATTTACAAACGAAAATCTGAAGG 1900
|||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 1861 GAGAGTGATCCTCATCTCTTTTCTTGCACATATACAAACGAAAGTCTGAAGG 1912
Score = 1541 bits (834), Expect = 0.0
Identities = 931/978 (95%), Gaps = 5/978 (1%)
Strand=Plus/Plus
Query 1959 TACAGAGATCTTCAGCTTCACTCAAGATGATTTGATGACTGAAGATATCTTCATACTTGA 2018
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 TACAGAGATCTTCAACTTCACTCAAGATGATTTGATGACTGAAGATATCTTCATACTTGA 1973
Query 2019 TTGTCACACTGAAATCTTTGTCTGGGTGGGACAACAAGTTGACCCAAAGAAGAAACCTCA 2078
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TTGTCACACTGAGGTCTTTGTCTGGGTGGGACAACAAGTTGACCCAAAGAAGAAACCTCA 2033
Query 2079 AGTTTTAGCCATTGGAGAGAATTTTCTCAAGCACGATTTCCTCCTAGAGAATCTAGCAAG 2138
|| ||| | |||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 2034 AGCTTTGGACATTGGAGAGAACTTTCTTAAGCATGATTTCCTCCTAGAGAATCTAGCAAG 2093
Query 2139 TGAAACACCAATATATATTGTAACAGAGGGAAATGAACCTCCATTTTTCACTCGGTTCTT 2198
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2094 TGAAACACCGATATACATTGTAACAGAGGGAAACGAACCTCCATTTTTCACTCGGTTCTT 2153
Query 2199 CACCTGGGACTCTTCTAAATCTGGAATGCACGGAAACTCTTTCCAGAGAAAGCTTGCGAT 2258
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2154 CACCTGGGACTCTTCTAAATCTGGAATGCATGGAGACTCTTTCCAGAGAAAGCTTGCGAT 2213
Query 2259 CCTGACAAATAAAGGAAAGCCGCTTCTAGATAAACCTAAAAGGAGAGTCCCTGCATACAG 2318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 CCTGACAAATAAAGGAAAGCCGCTTCTAGATAAACCTAAAAGGAGAGTCCCTGCATACAG 2273
Query 2319 CAGCAGGTCCACAGTTCCTGACAAGTCGCAGCCTCGGTCCAGAAGTATGACCTTTAGTCC 2378
||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2274 TAGCAGGTCCACCGTTCCAGACAAATCGCAGCCTCGGTCCAGAAGTATGACTTTTAGTCC 2333
Query 2379 AGACAGGGCCCGCGTGAGGGGACGGTCACCAGCTTTCAACGCACTTGCAGCAAACTTTGA 2438
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2334 AGACAGGGCCCGCGTGAGGGGACGGTCTCCAGCTTTCAACGCACTTGCAGCAAACTTTGA 2393
Query 2439 GAAACTAAATATAAGAAACCAATCAACTCCACCACCTATGGTTAGTCCAATGGTCCGGAA 2498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 GAAACTAAATATAAGAAACCAATCAACTCCACCACCTATGGTTAGTCCAATGGTCCGGAA 2453
Query 2499 GCTTTACCCGAAATCTCATGCCCCAGACCTCTCAAAGATAGCTCCTAAATCCGCGGCTAT 2558
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2454 GCTTTACCCGAAATCTCATGCCCCAGACCTCTCGAAGATAGCTCCTAAATCCGC---TAT 2510
Query 2559 AGCTGCCCGTACGGCGCTTTTCGAAAAATCTCCTCCTACTTCTCAAGAACCACCTACTAG 2618
|||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 2511 AGCTGCCCGTACAGCGCTTTTTGAAAAACCTACTCCTACTTCTCAAGAACCACCTACTAG 2570
Query 2619 CCCCAGTTCTTCAGAAGCTACTAACCAAGCAGAAGCACCAAAATCGACATCAGAGACGAA 2678
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2571 CCCCAGTTCTTCAGAAGCTACAAACCAAGCAGAAGCACCAAAATCGACATCAGAGACAAA 2630
Query 2679 CGAGGAAGAAGCAATGAGCAGCATCCATGAAGATTCAAaagaagaagaagcagaagaaga 2738
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2631 CGAGGAAGAAGCAATGAGCAGCATCAATGAAGACTCAAAAGAAGAAGAAGCAGAAGAAGA 2690
Query 2739 TAGCAGCCTCCCTACTTTCCCATATGAGCGCCTCAAAACCGACTCAGAGAATCCTGCTTC 2798
|||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||
Sbjct 2691 GAGCAGCCTCCCTACTTTCCCATATGAACGCCTTAAAACCGACTCAGAGGATCCTGTTTC 2750
Query 2799 AGATATCGACCTCACAAGAAGAGAGGCATACATGACTTCA-TCAGAGTTCAAAGAGAAGT 2857
|||| |||||||||| ||||||||||||||| |||||||| | ||||||||| |||||||
Sbjct 2751 AGATGTCGACCTCACTAGAAGAGAGGCATACTTGACTTCAGT-AGAGTTCAAGGAGAAGT 2809
Query 2858 TTGAGATGACAAAGAACGAGTTCTATAAACTGCCTAAATGGAAACAAAACAAGCTGAAAA 2917
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2810 TTGAGATGACAAAGAATGAGTTCTACAAACTGCCTAAATGGAAACAAAACAAGCTCAAAA 2869
Query 2918 TGTCTGTTAATCTCTTCT 2935
||||||| ||||||||||
Sbjct 2870 TGTCTGTCAATCTCTTCT 2887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145985804130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5