BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495834
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57345.1 | Symbols: | unknown protein; Has 30201 Blast hits... 935 0.0
> AT5G57345.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23229407-23230638
REVERSE LENGTH=773
Length=773
Score = 935 bits (506), Expect = 0.0
Identities = 625/680 (92%), Gaps = 18/680 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTTCGCCGCCGTAGCTTCTACACGACAAAGCTTTTTATCGAACTCTTTCAGTTTC 60
|||| |||||||||| |||||||| |||||||||||||||| || ||| ||||||||||
Sbjct 52 ATGTATTTCGCCGCCATAGCTTCTTCACGACAAAGCTTTTTGTCAAACAATTTCAGTTTC 111
Query 61 CGACACAGCTTTAAACCCAAATCCAATGTTAACCTCACTCGTCCTAATTCAGTCTGTTGT 120
| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 112 CAACACAGTTTTAAACCCAAATCCAATGTTAACCTCACTCGTCCTAATTCAATCTGTTGT 171
Query 121 AAATCTTCACACCACGACGACGAAACTGATTCTTCCCGGAAAAATGAGAATCAGCTGGCG 180
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 172 AAATCTTCACACCACGACGACGAAACTGATTCTTCTCGGAAAAATGAAAATCAGCTGGCG 231
Query 181 AAATTGGCAATCGCGACGCTAGCTGTTGGCGTTTTGGCTTTCGGAAGCGTTGGAGATGCG 240
|| |||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct 232 AAGTTGGCAATCGCGACGCTAGCGGTTGGCGTTTTGGCTTTGGGAAGTGTTGGGGATGCG 291
Query 241 TTTGCGGCCAAAAGCGGTGGTAGAATCGGTGGTCAAGCGTTTCGCTCTTCAGCTCCTCGC 300
|||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 292 TTTGCGGCCAAAAGCGGTGGAAGAATCGGCGGTCAAGCGTTTCGGTCTTCAGCTCCTCGT 351
Query 301 CCTCCTCCTAGAATTAACAACCGCTCGAGGACCAACATCTACGTGAATCCTCCGGTTGCA 360
|||||||| ||||||||||| || || ||||||||||||||||||||||||| |||||||
Sbjct 352 CCTCCTCCCAGAATTAACAATCGATCAAGGACCAACATCTACGTGAATCCTCAGGTTGCA 411
Query 361 CCACCTTTGATCGGTGGGTATGGATATGGTTACGGCGGTTACGGATTGTCACCATTTTCC 420
||||||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 412 CCACCTTTGATCGGTGGCTATGGATATGGTTACGGAGGTTACGGATGGTCACCGTTTTCC 471
Query 421 TTTTTTGCCCCTGGTCCTGCGGTGGCAGTTGGTGTTGGCGGTGGCTTCGACCTCCTACTT 480
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 472 TTTTTTGCCCCTGGTCCTGCGGTGGCAGTAGGTGTTGGCGGTGGCTTTGACCTCCTACTT 531
Query 481 CTCTTCATGTTTTTTGGAGCCGCTTCAGCCGTTGCTAGAAACTTTTTCCGATCAAGAAAT 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 532 CTCTTCATGTTTTTTGGAGCCGCTTCAGCCGTCGCTAGAAACTTTTTCCGATCAAGAAAT 591
Query 541 GATGAAGATGACGAAGATGACTATTAGAG-AG-----G--------CTTATGTAACAACA 586
||||||||||||||||| ||||||||||| || | |||||||||||| |
Sbjct 592 GATGAAGATGACGAAGACGACTATTAGAGGAGAAAACGGAGAGAGGCTTATGTAACAATA 651
Query 587 GTCATACATACGATTTTGTGTaaaaaaaTTACGATGGAAGAAGACGGATAT--GTG-AAA 643
||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||
Sbjct 652 GTCATACATACGATTTTGTGTAAAAAAAT-ATGATGGAAGAAGACGGATATATGTGGAAA 710
Query 644 TCTTGAAATAGGTAACTAAA 663
|||||||||| |||||||||
Sbjct 711 TCTTGAAATAAGTAACTAAA 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5