BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495837
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57370.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1009 0.0
> AT5G57370.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:23244734-23246420 FORWARD LENGTH=1016
Length=1016
Score = 1009 bits (546), Expect = 0.0
Identities = 668/723 (92%), Gaps = 23/723 (3%)
Strand=Plus/Plus
Query 1 GAAATTGGTTAAACCCTGACACTACCACCTCCCTCAGTCGCGTCACCACCATGTCAGAGC 60
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 28 GAAATTGGTTAAACCCTGACACTAGCACCTTCCTCAGTCGCATCACCACCATGTCAGAGC 87
Query 61 GCGACCGCCACGAACGAGGGAGGGATAGGGACCGTGAACGC-GACCGTGATAGACGCCGA 119
||||||||| |||||||| |||||||| ||||||||||| | ||||||||||||||||||
Sbjct 88 GCGACCGCCGCGAACGAGAGAGGGATAAGGACCGTGAAC-CAGACCGTGATAGACGCCGA 146
Query 120 GGTAGAGACGACCGTGACCGTGACCGTGATCGAGACCGGGAAAGAGATAGAGAGCGCGAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GGTAGAGACGACCGTGACCGTGACCGTGATCGAGACCGGGAAAGAGATAGAGAGCGCGAC 206
Query 180 CGTGACCGAGGGCTAAGAAGCAAGAAATCCCGATCTCGTACTCCAGACCACCACGCTCGT 239
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 207 CGTGACCGAGGGCTTAGAAACAAAAAATCCCGATCTCGTACTCCAGACCACCACGCTCGT 266
Query 240 GCTCGCCACGTGCGTTCTCCGGAGAGATATCGCTCTCGTTCCCGCTCGATTGACCGTGAC 299
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 267 GCTCGCCACGTGCGCTCTCCGGAGAGGTATCGCTCTCGTTCCCGCTCGATTGACCGTGAC 326
Query 300 CGGGACCG------TCAACGACACCACAGGCGCAGGACTCCTTCCCCAGATGCGTC-GTC 352
|||||||| |||||||||||||||||||||| ||||||| |||||||| || |||
Sbjct 327 CGGGACCGGGACCGTCAACGACACCACAGGCGCAGGTCTCCTTCTCCAGATGC-TCCGTC 385
Query 353 GCGAAAACGGCCTCGCCAGGGTTCAGCAGACGATGAGAAGGAAAGGAATCGCAAACGA-- 410
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||
Sbjct 386 GCGAAAACGGCCTCGCCAGGGTTCAGTAGACGATGAGAAAGAAAGGAATCGCAAAAGAGT 445
Query 411 AGTGTATCTGATTTCGTTGACGAGATTGGGAAAGAGCTTACTACTACTAAGAAGAAGGAT 470
|||| | |||||| ||||||||||| || | || |||| ||||||||||||||||
Sbjct 446 AGTG-A-CTGATTCCGTTGACGAGAATGCGT-----CT-ACTATTACTAAGAAGAAGGAT 497
Query 471 AAACAACCAAGTGATGCTGCTGCTGATAATGGCGGAGGCGAAGCTGAAGAAGGAATGGAT 530
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 498 AAACAACCAAGTGATGCTGCTG---ATAATGGCGGAGGCGAAGATGAAGAAGGAATGGAT 554
Query 531 GTGAATGAGGTTGAGATGATGAAGATGTTAGGGATTCCTACTGGATTTGATTCCACCAAA 590
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 555 GTGAATGAGATTGAGATGATGAAGATGTTAGGGATTCCTACTGGATTTGATTCCACAAAA 614
Query 591 GGTAAACCAGTTGCTGGTGCTGATGTTAGTGGGATTAGAGCTGTGACCAAGCGTCAGCCA 650
|| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 615 GGCAAACCAGTTGCTGGTGCTGATGTTAGTGGTATTAGAGCTGTAACTAAGCGTCAGCCA 674
Query 651 AGACAGTACATGAACCGTCGCGGTGGATTTAACCGTCCTTTGCCTGCTGAGCGTAATCGC 710
||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||
Sbjct 675 AGACAGTACATGAACCGTCGCGGTGGATTTAACCGTCCTCTACCGGCCGAGCGTAATCGC 734
Query 711 TAG 713
|||
Sbjct 735 TAG 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34561093136
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5