BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495839
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57390.1 | Symbols: AIL5, CHO1, EMK | AINTEGUMENTA-like 5 | ... 2462 0.0
> AT5G57390.1 | Symbols: AIL5, CHO1, EMK | AINTEGUMENTA-like 5
| chr5:23253459-23256450 REVERSE LENGTH=1690
Length=1690
Score = 2462 bits (1333), Expect = 0.0
Identities = 1578/1692 (93%), Gaps = 34/1692 (2%)
Strand=Plus/Plus
Query 1 CCTATTTCCAAAGATGAAGAACAATAACAACAAAtcttcttcttcttctagctatgattc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTATTCCCAAAGATGAAGAACAATAACAACAAATCTTCTTCTTCTTCTAGCTATGATTC 60
Query 61 ttctttgtctccttcttcttcatcttcctcccaccagaactggctctctttctctctct- 119
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTTTGTCTCCTTCTTCTTCATCCTCCTCCCACCAGAACTGGCTCTCTTTCTCTCTCTC 120
Query 120 c--cAAT---AACAACTTCAATTCTTCCTCAAACCCTAatctcacttcctctacatcaga 174
| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CAACAATAACAACAACTTCAATTCTTCCTCAAACCCTAATCTCACTTCCTCCACATCAGA 180
Query 175 tcatcatcatcctcacccttctcatctctctctctttcaAGCTTTCTCCACTTCTCCAGT 234
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TCATCATCATCCTCACCCTTCTCACCTCTCTCTCTTTCAAGCTTTCTCCACTTCTCCAGT 240
Query 235 CGAACGGCAAGATGGGTCACCTGGAGTTTCAACCGGCGATGCCACGGCGGTTCTTTCCAT 294
||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| |
Sbjct 241 CGAACGGCAAGATGGGTCACCGGGAGTTTCACCCAGCGATGCCACGGCGGTTCTTTCCGT 300
Query 295 TTACCCCGGCGGTCCTAAACTTGAGAACTTCCTCGGCGGAGGAGCCACAACGACGACAAC 354
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ATACCCCGGCGGTCCTAAACTTGAGAACTTCCTCGGCGGAGGAGCCTCAACGACGACAAC 360
Query 355 AAGATCAATGCAACAAGTGCAATCTCTCGGAGGTGTTGTCTTCTCTTCCGACTTACAGCC 414
|||| |||||||||||||||||||||| || || |||||||||||||||||| |||||||
Sbjct 361 AAGACCAATGCAACAAGTGCAATCTCTTGGCGGCGTTGTCTTCTCTTCCGACCTACAGCC 420
Query 415 ACCGCTTCATCCTCCCTCCGCAGCCGAGATCTACGACTCGGAGCTCAAATCAATAGCCGC 474
||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 421 ACCGCTTCATCCTCCGTCCGCCGCCGAGATCTACGACTCTGAGCTCAAGTCAATAGCCGC 480
Query 475 TAGCTTCCTCGGAAACTACTCCGGTGGACACTCGTCAGAAGTCTCTAGCGTTCATAAGCA 534
||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 481 TAGCTTCCTAGGAAACTACTCCGGTGGACACTCGTCGGAGGTCTCTAGCGTACATAAACA 540
Query 535 ACAACAGAACCCTCTAGCTGTCTCAGAGGCTTCGCCCACTCCAAAGAAGAACGTAGAGAG 594
||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 541 ACAACCGAATCCTCTAGCTGTCTCAGAGGCTTCGCCTACTCCGAAGAAGAACGTAGAGAG 600
Query 595 TTTTGGACAACGTACTTCGATTTATAGAGGAGTCACAAGACATCGATGGACTGGAAGATA 654
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 TTTTGGACAACGTACCTCGATTTATAGAGGAGTCACAAGACATAGATGGACTGGAAGATA 660
Query 655 CGAAGCTCATCTATGGGATAATAGTTGCCGAAGAGAAGGCCAAAGTAGAAAAGGAAGAC- 713
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 CGAAGCTCATCTATGGGATAATAGTTGCCGAAGAGAAGGCCAAAGCAGAAAAGGAAGACA 720
Query 714 -----A---AGGTGGTTATGATAAAGAAGAGAAAGCAGCTAGAGCTTACGACCTTGCAGC 765
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 721 AGTTTATTTAGGTGGTTATGATAAGGAAGATAAAGCAGCTAGAGCTTACGACCTTGCAGC 780
Query 766 TCTTAAGTATTGGGGTCCTACAACTACGACTAATTTCCCGATATCAAATTACGAGTCTGA 825
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 781 TCTTAAGTATTGGGGTCCTACAACTACGACTAATTTCCCGATATCAAATTACGAATCTGA 840
Query 826 ACTTGAAGAGATGAAACACATGACTCGACAAGAGTTCGTTGCTTCTCTAAGAC------G 879
||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 841 ACTTGAAGAAATGAAACACATGACTCGACAAGAGTTCGTTGCTTCTTTAAGACGGAAAAG 900
Query 880 CAGTGGATTCTCTAGGGGTGCCTCCATGTACAGAGGTGTCACTAGACATCATCAGCATGG 939
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 CAGTGGATTCTCTAGGGGTGCCTCCATGTACAGAGGCGTCACTAGACATCATCAGCATGG 960
Query 940 TCGATGGCAGGCACGAATTGGAAGAGTTGCCGGCAACAAAGACCTTTATCTTGGCACATT 999
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 TCGATGGCAGGCACGAATTGGAAGAGTTGCAGGCAACAAAGACCTTTATCTTGGCACATT 1020
Query 1000 TAGCACTCAAGAGGAAGCTGCAGAAGCTTACGATATAGCAGCGATCAAATTCCGCGGTCT 1059
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1021 TAGCACTCAAGAGGAAGCTGCAGAAGCTTATGATATAGCAGCGATCAAATTCCGCGGTCT 1080
Query 1060 AAATGCAGTTACCAATTTCGACATCAGTCGATATGATGTCAAATCTATAGCTAGTTGTAA 1119
||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1081 AAATGCAGTCACCAATTTCGACATCAGTCGATATGATGTCAAATCAATTGCTAGCTGTAA 1140
Query 1120 TCTCCCTGTGGGTGGACTAATGCCTAAACCGTCTCCAGCAACCGCAGCAGCTGAGAAAAC 1179
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1141 TCTCCCTGTGGGTGGACTAATGCCTAAACCTTCTCCAGCAACCGCAGCGGCTGACAAAAC 1200
Query 1180 CGTTGATCTATCTGCATCCGACACTCCATCACCGACGACACCGTCTCTGACCTTCAATGT 1239
||||||||| ||| |||||||| ||||||| | || |||||||| || || ||||||||
Sbjct 1201 CGTTGATCTTTCTCCATCCGACTCTCCATCTCTAACCACACCGTCCCTCACGTTCAATGT 1260
Query 1240 GGCAACAACGGTCCATGACCATGGAGGAACTTTTTACCACACTGGAATACCAATCAAACC 1299
||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1261 GGCAACACCGGTCAATGACCATGGAGGAACTTTTTACCACACTGGTATACCAATCAAACC 1320
Query 1300 AGACCCGGCTGATCATTATTGGTCCAGCATCTTTGGATTCCAGGCAAACCCGAAAGCCGA 1359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1321 AGACCCGGCTGATCATTATTGGTCCAACATCTTTGGATTCCAGGCAAACCCGAAAGCAGA 1380
Query 1360 GATGCGACCAATAGCAACCTTTGGGTCGGATCTTCATAACCCCTCTCCAGGTTATGCTAT 1419
||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1381 AATGCGACCATTAGCAAACTTTGGGTCGGATCTTCATAACCCTTCTCCTGGTTATGCTAT 1440
Query 1420 AATGCCGGTAATGCAAGAAGGCGAAAACAACTTTGGTGGTAGTTTTGTTGGGTCTGAAGT 1479
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1441 AATGCCGGTAATGCAGGAAGGTGAAAACAACTTTGGTGGTAGTTTTGTTGGGTCTGATGG 1500
Query 1480 GTATAACAATCATTCCGCT-CATTCGAGCCCGGTCTCAGCAACTCCGCTGTCATCGTCAA 1538
||||||||||||||||||| ||| ||| |||||||||||||| ||||||||| ||| |||
Sbjct 1501 GTATAACAATCATTCCGCTGCAT-CGAACCCGGTCTCAGCAATTCCGCTGTCCTCGACAA 1559
Query 1539 CGA-A-TG-GTAACG--AA-G--GG-TATGGTGGAAACATAAACTGGATTAATAACAACA 1589
| | | || |||||| || | || ||||||||||||||||||||||||||||||||||
Sbjct 1560 CTACAATGAGTAACGGTAACGAAGGGTATGGTGGAAACATAAACTGGATTAATAACAACA 1619
Query 1590 TTTCA-GATTCTTACCAAACTGCAAAGTCTAATCTCTCTGTTTTGCAGACACCAGTTTTT 1648
||||| | |||||||||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct 1620 TTTCAAG-TTCTTACCAAACTGCAAAATCAAATCTCTCTGTTTTGCACACACCGGTTTTT 1678
Query 1649 GGGTTAGAATGA 1660
||||| ||||||
Sbjct 1679 GGGTTGGAATGA 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5