BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495841
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57410.3 | Symbols: | Afadin/alpha-actinin-binding protein ... 2069 0.0
> AT5G57410.3 | Symbols: | Afadin/alpha-actinin-binding protein
| chr5:23264314-23267883 REVERSE LENGTH=1455
Length=1455
Score = 2069 bits (1120), Expect = 0.0
Identities = 1288/1364 (94%), Gaps = 31/1364 (2%)
Strand=Plus/Plus
Query 1 GATTATTATGACTGAAATAAAAAGCAAAGTGaaaaaaaaTAGAGGTTTT-AAAAC-TTTA 58
||||||||| ||||||||||||||||||||| ||| | ||||||| ||||| ||||
Sbjct 13 GATTATTATTACTGAAATAAAAAGCAAAGTG-----AAA-A-AGGTTTTAAAAACTTTTA 65
Query 59 TTTTCGCTCTTCTCTAGAAACATTCCGTTTCAGATAtttttgatttttgaatttgttttC 118
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TTTTCGCTCTTCTCCAGAAACATTCCGTTTCAGATATTTTTGATTTTTGAATTTGTTTTC 125
Query 119 G----ctctctctctctGCTTAGATTTAGATCTGTTCCTGTGAATTGATTCTCTG-TTCA 173
| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 126 GCTCTCTCTCTCTCTCTGCTTAGA-TTAGATCTGTTCCTGTGAATTGATTCTCTGTTTC- 183
Query 174 ATCGTGTTTCTCACGCCGTCGGTTTCGCCGGAGAAGGAAGTTCTTCACATCGTCGTTTCG 233
||||| || ||||||||| || ||||||||||| ||||| | || ||||| |||||||
Sbjct 184 ATCGT-TTGCTCACGCCGCCGTTTTCGCCGGAGGTGGAAG--C-TCTCATCGCCGTTTCG 239
Query 234 AAAATGCCGGCGAATGATGCTGAGTACGATCTCAAAGTTTTATCTCAATCTGCG--A-CG 290
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 240 AAAATGCCGGCGAATGATGCTGAATACGATCTCAAAGTTTTATCTCAATCTGCGTCAGCA 299
Query 291 GGGGATTACACATTCGCGAATGTGGATAATTTGGAGCATTGTACGAAGTATTTGAATCAG 350
|||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 300 GGGGATTACACATTTGCGAATGAGGATAACTTGGAGCATTGTACGAAGTATTTGAATCAG 359
Query 351 ACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCGGTTTCT 410
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 360 ACGATGGTTACATTTGGATTTCCCGCCTCGCTCGATCTCTTTTCGAATGATCCTGTTTCT 419
Query 411 ATCTCAAGGACCTGCAATTGTATGTACTCGTTGCTGCAGCAGCGACAACGTGATATAGAG 470
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATATCAAGGACCTGCAATTGTATGTACTCGTTGCTGCAGCAGCGACAACGTGATATAGAG 479
Query 471 TTTAGAGAATCTGCTAATGAGCTGAGACAGAGACAACAATCGGATATAGCTAGACTTGAA 530
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 TTTAGAGAATCTGCTAATGAGCTGAGACAGAGACAGCAATCGGATATAGCTAGACTTGAA 539
Query 531 GCTAAAGTTGAGAGGCTTGAAGCGCTACTCCAACAGAAGGACAGGGAAATTGCAACAATT 590
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GCTAAAGTTGAGAGGCTTGAAGCGCTACTCCAACAGAAGGACAGAGAAATTGCAACAATT 599
Query 591 ACCAGAACCGAAGCCAAAAACGCTGCAGCTTTGAAGTCTCAGATTGAAAAGTTACAGCAG 650
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACCAGAACCGAAGCCAAAAACACTGCAGCTTTGAAGTCTCAGATTGAAAAGTTACAGCAG 659
Query 651 GAGAGGGATGAATTCCAAAGAATGGTGATTGGTAACCAGCAAGTCAAGGCTCAACAGATA 710
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 660 GAGAGGGATGAATTCCAAAGGATGGTGATTGGTAACCAGCAAGTGAAGGCTCAACAGATA 719
Query 711 CACGAAATGAAGAAAAAGGAGAAGGATTACATTAAGTTGCAGGAACGGCTGAATCAAGTA 770
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CACGAAATGAAGAAAAAGGAGAAGGATTACATTAAGTTGCAGGAACGGCTGAATCAAGTG 779
Query 771 TTAATGGAGAAAAAGAAAGAATCAAGATCTGGAATGGAGATTATGAATTTGTTACAGAAA 830
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TTAATGGAGAAAAAGAAAGAATCAAGATCTGGAATGGAGATTATGAATTTGCTACAGAAA 839
Query 831 GAAGGGAGGCAACGTGGTACCTGGAATGGCAAGAAGACTGATACTGACTTCTACAAAAAG 890
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 840 GAAGGGAGGCAACGTGGTACCTGGAATGGCAAGAAGACTGATACCGACTTCTATAAAAAG 899
Query 891 ATAGTGGATGCGTATGAAGCGAAAAATCAAGAATTGATGGCTGAGAACACTAATCTTAGA 950
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 900 ATAGTGGATGCGTACGAAGCGAAAAATCAAGAATTGATGGCTGAGAACACTAGTCTAAGA 959
Query 951 GGATTACTTCGATCCATGCAGACAGATATGCGCGATTTCTTAAATGCTCCAAATGGGTCA 1010
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 GCATTACTTCGATCCATGCAGACAGATATGCGTGATTTCTTAAATGCTCCAAATGGGTCA 1019
Query 1011 GCTAATCCTTCATTGGCTGGAAGTGAGAAACGTGAGGCTGATCCTTCACAATCTCCACTG 1070
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCTA--C----ATTGGCTGGAAGTGAGAAACGTGAGGCTGATCCTTCACAATCTCCACTG 1073
Query 1071 GGTGGGAAGACGGACGTATTTGACCTACCTTACCGGATGGCTAGAGGTCAAATAGAAGAA 1130
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1074 GGTGGGAAGACGGACGTGTTTGATCTACCTTACCGGATGGCTAGAGGTCAAATAGAAGAA 1133
Query 1131 AGTTTGCGCACTAAGATGGCTTCCATTAAGGAACGCATGGTTCAGTTACAAGATGCACCT 1190
|||||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct 1134 AGTTTGCGTACTAAGATGGCTTCCATAAAGGAAAGCATGGTCCAGTTACAAGATGCACCT 1193
Query 1191 AAAGGAGCATCTGTTACATCTGAAGCAACAGAGAGAGAGCTTGAACTCGAAGCTCAGCTC 1250
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AAAAGAGCATCTGTTACATCTGAAGCAACAGAGAGAGAGCTTGAACTCGAAGCTCAGCTT 1253
Query 1251 GTGGAGGCAAGAAGCATAATCCAAGAACAGGAGTCAATAATGTCGAAACATCTCCCAAAA 1310
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1254 GTCGAGGCAAGAAGCATAATCCAAGAACAGGAGTCCATAATGTCGAAACATCTCCCAAAA 1313
Query 1311 TCAGAGAAGCGAAGGGATTCGGTAG-TTCCATTGGCAGCCGAGG 1353
|||||| |||||||||| || |||| ||| |||||||| ||||
Sbjct 1314 TCAGAGCAGCGAAGGGAATCTGTAGCTTCG-TTGGCAGCTGAGG 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5