BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495843
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57440.1 | Symbols: GS1, GPP2 | Haloacid dehalogenase-like h... 1764 0.0
> AT5G57440.1 | Symbols: GS1, GPP2 | Haloacid dehalogenase-like
hydrolase (HAD) superfamily protein | chr5:23271127-23272929
REVERSE LENGTH=1143
Length=1143
Score = 1764 bits (955), Expect = 0.0
Identities = 1050/1095 (96%), Gaps = 10/1095 (1%)
Strand=Plus/Plus
Query 1 ATCGAATCAATAATGTCGAATCCTGCAGCCGT---CGCCGGCAGAGGATCAATCACTCAC 57
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 18 ATCGAATCAACAATGTCGAATCCTGCAGCCGTCACCGCCGGCAGAGGATCAATCACTCAC 77
Query 58 GTCATATTCGACATGGACGGTCTTCTTCTCGACACTGAGAAGTTTTACACTGAGGTCCAA 117
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 78 GTCATATTCGACATGGACGGTCTTCTTCTCGATACTGAGAAGTTTTACACTGAGGTCCAA 137
Query 118 GAGATTATACTTGCTAGATTCAATAAAAAATTTGATTGGTCTCTTAAGGCTAAAATGATG 177
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 138 GAGATTATACTTGCTAGGTTCAATAAAAAGTTTGATTGGTCTCTCAAGGCTAAAATGATG 197
Query 178 GGTAGAAAAGCAATAGAAGCTGCCAGGATCTTTGTTGAAGAAAGCGGGATTAGCGACTCT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GGTAGAAAAGCAATAGAAGCTGCCAGGATCTTTGTTGAAGAAAGCGGGATTAGCGACTCT 257
Query 238 CTTTCCGCTGAGGACTTCCTTGTCGAGAGGGAGTCAATGTTGCAAGACCTTTTCCCTACT 297
||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 258 CTTTCAGCTGAGGACTTTCTTGTCGAGAGAGAGTCAATGTTGCAAGACCTTTTCCCTACT 317
Query 298 AGTGAGCTCATGCCAGGGGCTAGCCGACTCATCAAGCATCTCCAT-TCAAAGAATATTCC 356
||||||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||
Sbjct 318 AGTGAGCTCATGCCAGGGGCTAGTAGACTCATTAAGCATCTCCATGT-AAAGAATATTCC 376
Query 357 AATATGTATTGCTACCGGTACTCACACACGACATTATGATCTAAAAACCCAAAGACACAG 416
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 377 AATATGTATTGCTACCGGTACTCACACACGGCATTATGATCTGAAAACCCAAAGACACAG 436
Query 417 AGAGCTTTTCTCATTGATGCATCACATAGTTCGCGGTGATGATCCAGAGGTGAAGCAAGG 476
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 437 AGAGCTTTTCTCATTGATGCATCACGTAGTTCGTGGTGATGATCCAGAGGTGAAGCAAGG 496
Query 477 AAAGCCTGCCCCAGACGGGTTTCTCGCTGCAGCTAGGAGATTTAAGGTCGGTCCTGTGGA 536
||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 497 AAAGCCTGCTCCTGACGGGTTTCTCGCTGCTGCTAGGAGATTTAAGGACGGTCCTGTGGA 556
Query 537 TTCACAAAAGGTTCTGGTGTTCGAAGATGCTCCATCTGGAGTTCTTGCTGCTAAAAACGC 596
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 557 TTCACAAAAGGTTCTGGTGTTTGAAGATGCTCCATCTGGAGTTCTTGCTGCTAAAAACGC 616
Query 597 CGGAATGAACGTGGTGATGGTACCGGATCCTAGACTAGATATCTCTTACCAAGATGTTGC 656
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 617 CGGAATGAACGTGGTTATGGTACCGGATCCTAGACTAGATATCTCTCACCAAGATGTTGC 676
Query 657 AGATCAAATCATAACCTCTCTACTCGATTTTAAACCGGAGGAGTGGGGTTTGCCTCCATT 716
|||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 677 AGATCAAATCATAACCTCTCTAGTCGATTTTAAACCGGAAGAGTGGGGCTTGCCTCCATT 736
Query 717 CGAAGATTCAAACTAAACGATACAAGCGTCTTCAAGGTAATGATAAAAACTCAAATCATG 776
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 737 CGAAGATTCGAACTAAACGATACAAACGTCTTCAAGGTAATGATAAAAACTCAAATCATG 796
Query 777 AAGCTTATTCTTTGTCTTTATTATATCGTTTTGGCATGTACATGACAA-GGCCATGATGC 835
|||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||
Sbjct 797 AAGCTTATTCTTTGTCTTG-TTATATTGTTTTGGCATGTACATGACAAAGGCCATGAGGC 855
Query 836 ATTATGTCGTCAAGGGTTCTATGATTTTCTGGCTATTGAAGATATAAAAATAAACTAAGT 895
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 856 TTTATGTCGTCAAGGGTTCTATGATTTTCTGGCTATTGAAGACATAAAAAGAAACTAAGT 915
Query 896 GGTGACATGACGAGAGACCAAACAAAAAA-TT-GCCTCAACGTTTAAACAAAtttttttt 953
||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 916 GGTGACATGACGAGAGACCAAACAAAAAAATTTGCCTCAACGTTTAAACAAATTATTTTT 975
Query 954 GTACAACTACTCTTACCCACAAGTTTCAACATTGGCTTATCTTATTTTGTTCTTGTCGGG 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GTACAACTACTCTTACCCACAAGTTTCAACATTGGCTTATCTTATTTTGTTCTTGTCGGT 1035
Query 1014 ATAGCTGAATTGATTCCT-CTTTATGGTTTGGAATCTCTCTTCTTTACGCATCACTAACA 1072
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATAGCTGAATTGATTCCTTCTTTATGGTTTGGAATCTCTCTTCTTTACGCATCACTAACA 1095
Query 1073 TGTGTTGTTACTGCA 1087
|||||||||||||||
Sbjct 1096 TGTGTTGTTACTGCA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5