BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495846
Length=2234
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3507 0.0
> AT5G57460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages; Has
166 Blast hits to 166 proteins in 41 species: Archae - 0;
Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr5:23275169-23277488
FORWARD LENGTH=2320
Length=2320
Score = 3507 bits (1899), Expect = 0.0
Identities = 2101/2197 (96%), Gaps = 19/2197 (1%)
Strand=Plus/Plus
Query 54 CATTGAGATTGAATAGTCGCAATTAGTAGAAGCTTCGAGATCAATTTCGAATCGCGATCA 113
|||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 94 CATTGAGATTGAATAGTCACCATTAGTAGAAGCTTCGAGATCAATTTCGAATCGGGATCA 153
Query 114 TGTCGTGTTTAGCCCTAGCTCTGCAACCAGCAAATGGATCCGACATTTTGCTTCAAACTA 173
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 154 TGTCGTGTTTAGCCCTAGCTCTGCAACCAGCAAATGGATCCGACATTTTGCTCCAAACTA 213
Query 174 GAGAATGGTTTCCACCAGCAAGAGCCCTAATCGCTCTCTCGTATTTTCGTCAAATGCGTC 233
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 214 GAGAATGGTTTCCACCAGCAAGAGCCTTAATCGCTCTCTCGTATTTTCGTCAAATGCGTC 273
Query 234 AAGCATTAGCTTCCTCGAAGCAACAGCATCAGCAACAATCGAATCAGAAACAGAATCAAG 293
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 274 AAGCATTAGCGTCCTCGAAGCAGCAGCATCAGCAACAATCGAATCAGAAACAGAATCAAG 333
Query 294 ------------CTTCTTCTTCTTCCTCCGTTGCGGATCCCGACGACGCCACGGCGGCGG 341
|||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 334 CTTCTTCTTCTTCTTCTTCTTCTTCCTCCGTTGCGGATCCTGACGATGCCACGGCGGCGG 393
Query 342 AATTTGTAGGTGATGATCCACTTGCTGCTTCTAATGGACAGGTTATTGTTGGTGTTGAGA 401
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 394 AGTTTGTAGGTGATGATCCACTCGCTGCTTCTAATGGACAGGTTATTGTTGGTGTTGAGA 453
Query 402 GCAAGTATCGTGTGGTTTATAGATTAGTGAACTCGATCTATATCCTTGGTGTTACTGTCG 461
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GCAAGTATCGTGTAGTTTATAGATTAGTGAACTCGATCTATATCCTTGGTGTTACTGTCG 513
Query 462 CGGATCATGATAATTCGATTAATGTGTTTGAGTGTATTCATATTGTGAATCAAGCTGTTA 521
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 514 CGGATCATGATAATTCGATCAATGTATTTGAGTGTATTCATATTGTGAATCAAGCTGTTA 573
Query 522 GTGTTATTGTTACTGCTTGTCGTGGAGTTGAAGTGACTCCGGAGAAGCTTGGACGGAAGT 581
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 574 GTGTTATTGTTACTGCTTGTCGTGGAGTTGAAGTTACTCCGGAGAAGCTTGGACGGAAGT 633
Query 582 ATGCTGAGGTTTATATGGCGCTTGATATTGTTTTGCGTGGTGTTAGTAATATCCGTCTTG 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 ATGCTGAGGTTTATATGGCGCTTGATATTGTTTTGCGTGGTGTTAGTAATATCCGTCTTG 693
Query 642 CCGCGATGCTTGGTGCTATGCACGGGGATGGGATTGCGAAGATGGTTCATTCGGCTCTTG 701
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 694 CGGCGATGCTTGGTGCTATGCACGGAGATGGGATTGCGAAGATGGTTCATTCGGCTCTTG 753
Query 702 ATACTGAGAATAAGATCCGTGGAGCAGATAGTTGGATGGCTGTGGAATCGCACGCCGCAG 761
||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||||
Sbjct 754 ATACTGAGAATAAGATCCGAGGAGCTGATAGTTGGATGGCTGTTGAATCGCATGCGGCAG 813
Query 762 AGCATCAAGCTTCTGTGCACGCATTCTCAAATGCAAGATTTGAATTGCCTCTGGAGACTA 821
|||||||||||||||| ||||||| || |||||||||||||||||||||| |||||||
Sbjct 814 AGCATCAAGCTTCTGTAAACGCATTTTCTAATGCAAGATTTGAATTGCCTCCGGAGACTG 873
Query 822 TCT-CTGCTGGAGATGAATTTGCGGCGAGCTTGGCTCCAGTGGTGCCTGAATCAGAGCAA 880
| | | ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 874 T-TGCCGCTGGAGATGAGTTCGCGGCGAGCTTGGCTCCAGTGGTGCCTGAATCAGAGCAA 932
Query 881 TTGAAGGAAGAACCAGAGCCGGAGAATCAGGATCCTTTTGCAGCTAGTGAAACGATTAAC 940
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 933 TTGAAGGAAGAACCAGAGCCGGAGAATAAGGATCCTTTTGCGGCTAGTGAAACGATTAAC 992
Query 941 AAGGAGAAAGAACTTGTGGGTGGATTTAAGAAGACCAAGGATCCGTCCTCAACGGACTTG 1000
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 993 AAGGAGAAAGAACTTGTGGGTGGATTCAAGAAGACTAAGGATCCGTCCTCAACGGATTTG 1052
Query 1001 ACTTTGGCATTGGCTGGACTTGAAGTGACGACATTGCCTCCAGCTGAAGCAACACAGTCT 1060
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1053 ACTTTGGCATTGGCTGGACTTGAAGTGACGACATTACCTCCAGCCGAGGCAACACAGTCT 1112
Query 1061 ACGCACATCAATGTGGAAGGATTCGAAGGGCAATACGGTGGGATTGAGTTCAGCAATGAA 1120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1113 ACGCACATCAATGTGGAAGGATTCGAAGGGCAGTATGGTGGGATTGAGTTCAGCAATGAA 1172
Query 1121 CAGGCTACGATTGGAGAAACTTTTGAATCGTTTAGTGATGCTTGGGGAGGTGGGTTGGAT 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CAGGCTACGATTGGAGAAACTTTTGAATCGTTTAGTGATGCTTGGGGAGGTGGGTTGGAT 1232
Query 1181 CCTTCAGAGTTTATGGGACCAAAGAAGATTCAAAAGAAGGAAGGACTCGGTGGGCTTGAG 1240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1233 CCTTCAGAGTTTATGGGACCAAAGAAGATTCAGAAGAAGGAAGGACTCGGTGGGCTTGAG 1292
Query 1241 CTGCTGCACACCAGTGACCCTAAGGCAGTGGAAGGCAAAGATGGAGGTAATCTCGATAAC 1300
||| ||||||||||||| || || |||||||||||||||||||||| |||| ||||||||
Sbjct 1293 CTGTTGCACACCAGTGATCCGAAAGCAGTGGAAGGCAAAGATGGAGTTAATATCGATAAC 1352
Query 1301 TTAGTTAAAAAGCCTGAGATGAAAGGTCCTGAAATGTATATCTCTGAGGAAATTAGAACC 1360
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 CTAGTTAAGAAGCCTGAGATGAAAGGTCCTGAAATGTATATCTCTGAGGAAATTAGAACC 1412
Query 1361 GAGTTTAGAGAATCCTTGCTTGCTAGAGTAGGAGTAATGGGTGTGATCTATCTGAAAACG 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 GAGTTTAGAGAATCCTTGCTTGCTAGAGTAGGAGTAATGGGTGTGATCTATCTGAAAACG 1472
Query 1421 ATGCCACCCAAAGGCTCTGGTGAAGAGAAAGAAACCGAGTTCTCATTCCGTGTTGAGGGT 1480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1473 ATGCCACCCAAAGGCTCTGGTGAAGAGAAAGAAACTGAGTTCTCATTCCGTGTTGAGGGT 1532
Query 1481 ACTACTGCAGTTAAGAGATTCGCTATGCAGAGTTCTCGGATCAGTAGCTTAGGGAATGGT 1540
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1533 ACTACTGCAGTTAAGAGATTTGCTATGCAGAGTTCTCGGATCAGTAGCTTAGGGAACGGT 1592
Query 1541 TTGTTTCACGTGAGAACTGCTCCATCAGAAGAACCAATCCCTATCCTTAAATATAGCTTG 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 TTGTTTCACGTGAGAACTGCTCCATCAGAAGAACCAATCCCTATCCTTAAATATAGCTTG 1652
Query 1601 CAACCTAAACTAACCCCATTGCCTCTTAGAGTCCGAATGGTGAAACGAACCAGCGGGACT 1660
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1653 CAACCTAAACTAACCCCGTTGCCTCTTAGAGTCCGAATGGTGAAACGAATCAGCGGGACT 1712
Query 1661 TTACTCTCACTTATGATACAATACGTCTCAAATCCGGATCTACCTCAGCCTCTGAAAAAC 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1713 TTACTCTCACTTATGATACAATACGTCTCAAATCCGGATCTACCTCAGCCTCTGAAAAAC 1772
Query 1721 GTCGACTTTATCCTGAAACTCCCGGTTGATCCCACATTGCTCAAGGTTTCGCCTAAAGCA 1780
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1773 GTCGACTTTATCCTAAAACTCCCGGTTGATCCCACATTGCTTAAGGTTTCGCCTAAAGCA 1832
Query 1781 ATACTAAACAGAACCGATCAAGAACTGAAATGGCAAATTCCGGAGATTCCTCTGAAAGGA 1840
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1833 ATACTGAACAGAACCGATCGAGAACTGAAATGGCAAATTCCGGAGATTCCTCTGAATGGA 1892
Query 1841 AGTCCCGGGAGACTAAGAGCACGGATGCCTATTGATTCAGATAACAGCGAGGAAGAACCA 1900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1893 AGTCCCGGGAGACTAAGAGCACGGATGCCTATCGATTCAGATAACAGCGAGGAAGAACCA 1952
Query 1901 GAAATCATCTGCTATGTGAAATTCTCGGTTCAGGGAAATACTTCTTTGTCTGGTATCAGT 1960
|| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1953 GATATCATCTGCTATGTGAAATTCTCGGTACAGGGAAATACTTCTCTGTCTGGTATCAGT 2012
Query 1961 CTACGTGCAGCTGCTGAGGGAAATACAGATTTCTATGAGGTAGATCACAGGTACGAAACC 2020
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2013 CTACGTGCAGCTGCTGAGGGAAATACAGATTTCTTTGAGGTAGATCACAGGTACGAAACC 2072
Query 2021 GGAGTCTATATGTGCAATTGATTAA-GTTTCTCTTTAAAAGATTTAAATTGTTTATAAAT 2079
|||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |
Sbjct 2073 GGAGTCTATATGTGCAATTGATAAAAGTTTCTCTCTAAAAGATTTACATTGTTTATAATT 2132
Query 2080 TTCTCTAATGTT-TTCGAGTTTGGCCTTTGTTGAGAGTTAATTCTATTTTT-GATTTGTG 2137
|||||||||||| || |||||||||||||||||||||||| |||| ||||| | | ||||
Sbjct 2133 TTCTCTAATGTTCTT-GAGTTTGGCCTTTGTTGAGAGTTA-TTCTTTTTTTTGGTATGTG 2190
Query 2138 TCATGTAAGGTTTTGTGTACTTGTGTATTTTGACATCTCTTCATTGTTATGTTATCTGTT 2197
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2191 TCATGTAAGGTTTTGTGTACTTGTGTATCTTGACCTCTCTTCATTGTTATGTTATCTGTT 2250
Query 2198 TTACTCGATTTTCTTTCACAtttttttATTATTGAAA 2234
||||||||||| |||| |||||||| |||||||||||
Sbjct 2251 TTACTCGATTTGCTTTTACATTTTTATATTATTGAAA 2287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110842803360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5