BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495848
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57490.1 | Symbols: VDAC4, ATVDAC4 | voltage dependent anion... 1881 0.0
> AT5G57490.1 | Symbols: VDAC4, ATVDAC4 | voltage dependent anion
channel 4 | chr5:23283680-23285934 REVERSE LENGTH=1301
Length=1301
Score = 1881 bits (1018), Expect = 0.0
Identities = 1170/1240 (94%), Gaps = 24/1240 (2%)
Strand=Plus/Plus
Query 24 CTCTTCTCTTCTTCACCTTTGAGTTTCTCGAGGGTCCtttttttttttCAATTTTACTGC 83
|||||||| ||||||||||||||||||||| || | | |||| || |||||||||||
Sbjct 46 CTCTTCTC--CTTCACCTTTGAGTTTCTCGA-GG--C--TCTTTTCTT-AATTTTACTGC 97
Query 84 TAAATAGT-G-G-TTACTGTCTTCAGCCGCCGTCGCCGGATTTCATCATCGAAGGCGACG 140
|||||||| | | ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 98 TAAATAGTAGTGTTTACTGTCTTCAGCCGCCGTCGCCGGATTCCATTATCGAAGGCGACG 157
Query 141 GAAGCAGTTTTC-TAGGGTTTATCTAACGAAGCTCCTTTTGATTGTCATCGGTTCCGTTT 199
||||||| | || |||| ||| || |||||||||| ||||||||| |||||||||| ||
Sbjct 158 GAAGCAG-TATCTTAGGTTTTGTCCGACGAAGCTCCGTTTGATTGTTATCGGTTCCG-TT 215
Query 200 TTATTCGTCGATCTTCCATTTTCGTAAGGAATTTGTTTTCTACATCCGAAGATGGGAAGC 259
|||||||||||||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 216 GTATTCGTCGATCTTCCATTTTC-----GCATTTGTTTTCTATATCCGAAGATGGGAAGC 270
Query 260 AGTCCAGCTCCATTTGCCGATATTGGCAAGAAAGCCAAAGATCTCCTCAATAAGGATTAC 319
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 271 AGTCCAGCTCCGTTTGCCGATATTGGCAAGAAAGCCAAAGATCTCCTAAACAAGGATTAC 330
Query 320 ATTTTTGACCACAAGTTTACTCTCACAATGCTGAGTGCTACAGGAACGGAATTTGTGGCT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 ATTTTTGACCACAAGTTTACTCTCACAATGCTGAGTGCTACAGGAACGGAATTTGTGGCT 390
Query 380 ACTGGTTTGAAGAAGGATGATTTCTTTTTTGGCGATATAAGCACACTATATAAAGGTCAA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ACTGGTTTGAAGAAGGATGATTTCTTTTTTGGCGATATAAGCACACTATATAAAGGTCAA 450
Query 440 AACACCATTGTTGATCTGAAAATCGACAGCCACTCTTGTGTGTCCACAAAAGTAACTGTC 499
|||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||
Sbjct 451 AACACCATTGTTGATCTGAAAATCGACAGCCACTCTAGTGTGTCGACGAAAGTAACTCTC 510
Query 500 AAAAATCTGATGCCATCTGCTAAAGCTGTTATTAGTTTCAAAATACCTGATCACAAGTCT 559
|||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 511 AAAAATCTCTTGCCATCCGCTAAAGCTGTAATTAGTTTCAAAATACCTGATCACAAGTCT 570
Query 560 GGCAAGCTGGATGTGCAATATGTTCATCCTCATGCTACGCTCAATTCCAGCATTGGCCTC 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GGCAAGCTGGATGTGCAATATGTTCATCCTCATGCTACGCTCAATTCCAGCATTGGCCTC 630
Query 620 AACCCAACTCCTCTGTTAGATCTATCAGCAACTATCGGAAGCCAGAATGTTTGCCTTGGT 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AACCCAACTCCTCTGTTAGATCTATCAGCAACTATCGGAAGCCAGAATGTTTGCCTTGGT 690
Query 680 GGTGAAGTCAGTTTCGACACAGCTTCATCATCACTAACCAAGTACAATGCAGGGATTGGT 739
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 691 GGTGAAGTCAGTTTCGACACAGCTTCATCATCACTAACAAAGTACAATGCAGGGATTGGT 750
Query 740 TTCAACAACCAAGGCATCTCTGCTGCACTCATACTGGAGGATAAAGGGGAGAGTCTGAGA 799
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTCAACAACCAAGGCGTCTCTGCTGCACTCATACTGGAGGATAAAGGGGAGAGTCTGAGA 810
Query 800 GCTACTTACGTCCACACAGTGAACCCAACCACATCCTTCGGGGCAGAACTGATCCGTCGC 859
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 811 GCTACTTACGTCCACACAGTGAACCCAACCACATCCTTTGGTGCAGAACTGATCCGTCGC 870
Query 860 TTCTCCAATTATAACAACAGCTTCACCGTTGGAAGCTCTCACTCTTTGGATCAATTCACA 919
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 871 TTCTCCAATTATAACAACAGCTTCACCGTCGGAAGCTCTCACTCTGTGGATCAATTCACA 930
Query 920 GTGGTTAAGACCAGATTTTCTAACAATGGGAAAGCAGGGATGGTGGTCCAGAGAGAATGG 979
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 931 GTGGTTAAGACCAGATTTTCTAACAGTGGGAAAGCAGGGATGGTGGTCCAGAGAGAATGG 990
Query 980 AGACCGAAGTCTCTCATCACTTTGTCAGCTGAGTATGACTCAAAGGCTGTGACCTCTTCA 1039
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 991 AGACCGAAGTCGCACATCACTTTCTCAGCTGAGTATGACTCAAAGGCTGTGACCTCTTCA 1050
Query 1040 CCGAGGCTTGGCCTCGCCCTCGCCCTCAAACCATAAAACAAGAAAAGAGCTTTTATCAGT 1099
|| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1051 CCAAAGCTTGGTCTCGCCCTCGCCCTCAAACCATAAAACAAGAAAAGAGCTCTTATCAGT 1110
Query 1100 TTGGAA--CACAAATTAAACAATTCAAATTTTCACCAAGTTGCTaaaaaaaTTACCCCCA 1157
|||||| |||||| |||||||||||| |||||||||||| ||||||||||| |||||||
Sbjct 1111 TTGGAAAACACAAACTAAACAATTCAATTTTTCACCAAGT-GCTAAAAAAATCACCCCCA 1169
Query 1158 AACGAAAGGTTTGTAGGGTTATTAAATTTAACTTTTGCATTAATATTTGTTTTTTCATTG 1217
|||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 1170 AACGAACGGTTTGTAGGGTTATTGAATC-A-CTTTTGCATTAATATTTGTTTTTTCATTG 1227
Query 1218 TGATGTGaaaaaaaaGGGAGTGAGCAAAACCCAATTTTTT 1257
|||||||||| |||||||||||||||||||||||||||||
Sbjct 1228 TGATGTGAAAGAAAAGGGAGTGAGCAAAACCCAATTTTTT 1267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5