BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495852
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57530.1 | Symbols: XTH12, AtXTH12 | xyloglucan endotransglu... 1369 0.0
AT5G57540.1 | Symbols: XTH13, AtXTH13 | xyloglucan endotransglu... 1110 0.0
AT1G65310.1 | Symbols: ATXTH17, XTH17 | xyloglucan endotransglu... 73.1 4e-12
> AT5G57530.1 | Symbols: XTH12, AtXTH12 | xyloglucan endotransglucosylase/hydrolase
12 | chr5:23300321-23301605 REVERSE LENGTH=1062
Length=1062
Score = 1369 bits (741), Expect = 0.0
Identities = 849/901 (94%), Gaps = 8/901 (1%)
Strand=Plus/Plus
Query 1 ACAACAGCAAAAAATGGCGGCTTCTGCGACCAAACAGTCTCTGTTGTTGTTGGCGTCTCT 60
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 44 ACAACAGCAAAAAATGGCGGCTTTTGCGACCAAACAGTCTCCCTTGTTGTTGGCGTCTCT 103
Query 61 TCTGGTCTTGATCGGCGTAACCACCGGAAGTTTCTACGACAGCTTCGATATCACTTGGGG 120
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 104 TCTGATCTTGATCGGCGTAGCCACCGGAAGTTTCTACGACAGCTTCGATATCACTTGGGG 163
Query 121 AGCTGGTCGTGCTAATATATTCGAGAGTGGACAACTCTTGACTTGCACTCTCGACAAGAT 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 164 AGCTGGTCGTGCTAATATATTTGAGAGTGGACAACTCTTGACTTGCACTCTCGACAAGA- 222
Query 181 C-TCCGGTTCAGGTTTTCAATCGAAGAAAGAGTATTTGTTCGGAAAGATCGATATGAAGA 239
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 223 CATCCGGTTCAGGTTTTCAATCCAAGAAAGAGTATTTGTTCGGAAAGATCGATATGAAGA 282
Query 240 TGAAACTTGT-CGCTGGAAATTCTGCCGGAACCGTCACAGCTTACTACCTTTCTTCAAAA 298
| |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TAAAACTTGTTCCC-GGAAATTCTGCCGGAACCGTCACAGCTTACTACCTTTCTTCAAAA 341
Query 299 GGTGAGAAATGGGATGAGATCGATTTCGAGTTCTTGGGTAACGTTACCGGACAGCCTTAT 358
||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 342 GGTGAGACATGGGATGAGATTGATTTCGAGTTCTTGGGTAACGTTACTGGACAGCCTTAT 401
Query 359 GTTCTCCATACAAATGTGTTTACCGGAGGTAAAGGTGACCGCGAAATGCAGTTCTATCTC 418
||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 402 GTTATCCATACAAATGTCTTTACCGGAGGTAAAGGTAACCGCGAAATGCAGTTCTATCTC 461
Query 419 TGGTTTGATCCCACTGCGGATTTCCACACTTACACCGTCCTTTGGAATCCTCTTAACATC 478
||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 462 TGGTTTGATCCCACTGCTGATTTCCACACTTACACCGTGCTTTGGAACCCTCTCAACATC 521
Query 479 ATCTTTCTTGTGGACGGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTT 538
|||||||| || || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 522 ATCTTTCTGGTTGATGGTATCCCAATCCGGGTGTTCAAGAACAATGAGGCTAACGGCGTG 581
Query 539 GCTTACCCGAAAAACCAACCAATGAAGATCTACTCGAGTCTTTGGGAAGCTGATGATTGG 598
||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 582 GCTTACCCGAAAAGCCAACCAATGAAGATCTACTCAAGTCTATGGGAAGCTGATGATTGG 641
Query 599 GCCACACAAGGCGGGAGAGTCAAGATCGATTGGACTAACGCTCCATTCAGCGCTTCCTAC 658
|||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 642 GCCACACAAGGCGGGAAAGTCAAGACCGATTGGACCAACGCTCCATTCAGCGCTTCCTAC 701
Query 659 AAAAG-TTTCAACGATGTGGACTGCTGCAGCCGGACCTCGATATGGGACTGGGTTACCTG 717
| ||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 702 AGAAGCTTT-AACGATGTGGATTGCTGCAGCCGGACCTCGATATGGAACTGGGTTACGTG 760
Query 718 TAATGCGAATAGCAACTCGTGGATGTGGACTACGCTTAACGCAAATCAGCTTGGACAGCT 777
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 761 TAATGCGAATAGCAACTCGTGGATGTGGACTACACTTAATTCAAATCAGCTTGGACAGCT 820
Query 778 GAAGTGGGTGCAAGATGATTATATGATCTATAACTATTGTACAGATTTCAAGAGGTTCCC 837
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 821 GAAGTGGGTGCAAAAAGATTATATGATCTATAACTATTGTACGGATTTCAAGAGGTTCCC 880
Query 838 TCAAGGTTTACCCACGGAATGCAACCACAATTGATCGTATTACCA-AGAAAATTCAAGCA 896
||||||||||||||| |||||||||| ||| |||||||||||| | ||||||||||||||
Sbjct 881 TCAAGGTTTACCCACTGAATGCAACCTCAACTGATCGTATTAC-AGAGAAAATTCAAGCA 939
Query 897 C 897
|
Sbjct 940 C 940
> AT5G57540.1 | Symbols: XTH13, AtXTH13 | xyloglucan endotransglucosylase/hydrolase
13 | chr5:23302996-23304049 REVERSE LENGTH=855
Length=855
Score = 1110 bits (601), Expect = 0.0
Identities = 775/860 (90%), Gaps = 7/860 (1%)
Strand=Plus/Plus
Query 14 ATGGCGGCTTCTGCGACCAAACAGTCTCTGTTGTTGTTGGCGTCTCTTCTGGTCTTGATC 73
|||||||||| | | ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1 ATGGCGGCTTTTACAACCAAACAGTCTCTGTTGTTGTT---GTCTCTTCTGCTCTTGATC 57
Query 74 GGCGTAACCACCGGAAGTTTCTACGACAGCTTCGATATCACTTGGGGAGCTGGTCGTGCT 133
|| | || | |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 58 AGCCTCTCCGCAGGAAGTTTCTACGACAATTTCGATATCACTTGGGGAAATGGTCGTGCC 117
Query 134 AATATATTCGAGAGTGGACAACTCTTGACTTGCACTCTCGACAAGATCTCCGGTTCAGGT 193
|||||| | ||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 118 AATATAGTAGAGAGTGGACAGCTTTTGACTTGCACTCTCGACAAAATCTCCGGTTCAGGT 177
Query 194 TTTCAATCGAAGAAAGAGTATTTGTTCGGAAAGATCGATATGAAGATGAAACTTGTCGCT 253
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 178 TTTCAATCAAAGAAGGAGTATTTGTTCGGAAAGATCGATATGAAGATGAAACTAGTCGCC 237
Query 254 GGAAATTCTGCCGGAACCGTCACAGCTTACTACCTTTCTTCAAAAGGTGAGAAATGGGAT 313
||||| || || ||||||||||| |||||||||||||| || |||||||||| |||||||
Sbjct 238 GGAAACTCAGCAGGAACCGTCACTGCTTACTACCTTTCATCTAAAGGTGAGACATGGGAT 297
Query 314 GAGATCGATTTCGAGTTCTTGGGTAACGTTACCGGACAGCCTTATGTTCTCCATACAAAT 373
|| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 298 GAAATCGACTTCGAGTTCTTGGGTAATGTTACCGGACAGCCTTATGTACTTCATACAAAT 357
Query 374 GTGTTTACCGGAGGTAAAGGTGACCGCGAAATGCAGTTCTATCTCTGGTTTGATCCCACT 433
||||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 358 GTGTTCACCGGAGGCAAAGGTAACCGTGAAATGCAGTTCTATCTCTGGTTTGATCCCACT 417
Query 434 GCGGATTTCCACACTTACACCGTCCTTTGGAATCCTCTTAACATCATCTTTCTTGTGGAC 493
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 418 GCTGATTTCCACACCTACACCGTCCTGTGGAATCCTCTCAACATCATCTTTCTCGTGGAT 477
Query 494 GGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTTGCTTACCCGAAAAAC 553
|| ||||||||||| ||||||||||||||||||||||| ||||| || |||||||| | |
Sbjct 478 GGAATCCCAATCCGAGTGTTCAAGAACAACGAGGCTAATGGCGTGGCCTACCCGAAGAGC 537
Query 554 CAACCAATGAAGATCTACTCGAGTCTTTGGGAAGCTGATGATTGGGCCACACAAGGCGGG 613
|| ||||||||||| || || |||||||||||||||||||||||||| ||||||||||||
Sbjct 538 CAGCCAATGAAGATTTATTCAAGTCTTTGGGAAGCTGATGATTGGGCTACACAAGGCGGG 597
Query 614 AGAGTCAAGATC-GATTGGACTAACGCTCCATTCAGCGCTTCCTACAAAAGTTTCAACGA 672
| |||||||| | |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 598 AAAGTCAAGA-CAGATTGGACCAATGCTCCATTCAGCGCTTCCTACAAAAGTTTCAACGA 656
Query 673 TGTGGACTGCTGCAGCCGGACCTCGATATGGGACTGGGTTACCTGTAATGCGAATAGCAA 732
||||||||||||||||||||||||| | | | | ||||| || |||||||||||||||||
Sbjct 657 TGTGGACTGCTGCAGCCGGACCTCGTTGTTGAATTGGGTAACATGTAATGCGAATAGCAA 716
Query 733 CTCGTGGATGTGGACTACGCTTAACGCAAATCAGCT-TGGACAGCTGAAGTGGGTGCAAG 791
|||||||||||||||||| |||||| |||||||| | ||||||| |||||||||||||||
Sbjct 717 CTCGTGGATGTGGACTACCCTTAACTCAAATCAG-TATGGACAGATGAAGTGGGTGCAAG 775
Query 792 ATGATTATATGATCTATAACTATTGTACAGATTTCAAGAGGTTCCCTCAAGGTTTACCCA 851
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct 776 ATGATTATATGATCTATAACTATTGTACGGATTTTAAGAGGTTCCCTCAAGGTTTGCCTA 835
Query 852 CGGAATGCAACCACAATTGA 871
|||||||||| | ||| |||
Sbjct 836 CGGAATGCAATCTCAACTGA 855
> AT1G65310.1 | Symbols: ATXTH17, XTH17 | xyloglucan endotransglucosylase/hydrolase
17 | chr1:24257216-24258473 FORWARD LENGTH=1049
Length=1049
Score = 73.1 bits (39), Expect = 4e-12
Identities = 225/311 (72%), Gaps = 28/311 (9%)
Strand=Plus/Plus
Query 308 TGGGATGAGATCGATTTCGAGTTCTTGGGTAACGTTACCGGACAGCCTTATGTTCTCCAT 367
||||||||||||||||||||||||||||| ||| | | || || || ||| |||||||
Sbjct 350 TGGGATGAGATCGATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCATATACTCTCCAT 409
Query 368 ACAAATGTGTTTAC-CGGA-GGTAAAGGTGACCGCGAA-ATGCAGTT-CTATCTCTGGTT 423
|| ||||| || || | | || | ||| ||| ||| | || || | |||| |||||
Sbjct 410 ACTAATGT-TT-ACACAAAAGGCACAGGAGACAAAGAACAA-CAATTTC-ATCTATGGTT 465
Query 424 TGATCCCA-CTGCGGA-TTTCCACACTTACACCGTC-CTTTGGAATCCTCTTAAC-ATCA 479
|| |||| | | | |||| ||||||| | || | | ||||||||| || || |
Sbjct 466 CGA-CCCAACCGTTAACTTTC-ACACTTATTGCATCACAT-GGAATCCTCA-AAGGATTA 521
Query 480 TCTTT-CTTGTGGACGGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTT 538
| ||| | || || || || || || | | |||||||||| |||||| | || ||
Sbjct 522 TTTTTACG-GTTGATGGAATTCCTATTAGAGAGTTCAAGAACCCCGAGGCGATTGGAGTC 580
Query 539 GC-TTACCCGAAA-A-ACCAACCAATGAAGA-TCTACTCGAGTCTTTGGGAAGCTGATG- 593
| || ||| || | || ||||||||| || ||||| |||||||||||||||| || |
Sbjct 581 CCGTT-CCC-AACTAGAC-AACCAATGA-GACTCTACGCGAGTCTTTGGGAAGCCGA-GC 635
Query 594 ATTGGGCCACA 604
||||||| |||
Sbjct 636 ATTGGGCAACA 646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5