BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495853
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57550.1 | Symbols: XTR3, XTH25 | xyloglucan endotransglucos... 1718 0.0
> AT5G57550.1 | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase
25 | chr5:23304888-23306421 REVERSE LENGTH=1059
Length=1059
Score = 1718 bits (930), Expect = 0.0
Identities = 1010/1049 (96%), Gaps = 4/1049 (0%)
Strand=Plus/Plus
Query 1 GAACGATTTCAATTCTCCATCTTATTGACACATAAACATGGACCGGTCCACTTTGATCTT 60
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GAATGATTTCAATTCTCTATCTTATTGACACATAAACATGGACCGGTCCACTTTCATCTT 60
Query 61 ATCTCTACTCTTCACACTCACCGTCTCGACCACGACCCTCTTCTCTCCGGTTTTCTGC-G 119
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || |
Sbjct 61 ATCTCTACTCTTCACACTCACTGTCTCGACTACGACCCTCTTCTCTCCGGTTTTC-GCAG 119
Query 120 GAACTTTCGACACAGAATTCGATATCACTTGGGGTGATGGTCGTGGCAAGGTCCTTAACA 179
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 GAACGTTCGACACAGAATTCGATATCACTTGGGGTGATGGTCGTGGCAAGGTTCTTAACA 179
Query 180 ACGGAGAGCTTCTCACTCTTTCCCTCGACAGAGCCTCAGGCTCTGGTTTTCAAACCAAGA 239
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 ACGGAGAGCTTCTCACTCTCTCCCTCGACAGAGCCTCCGGCTCTGGTTTTCAAACCAAGA 239
Query 240 AAGAGTATTTATTCGGGAAAATCGATATGCAGCTCAAACTCGTCCCTGGAAACTCCGCCG 299
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 AAGAGTATTTGTTCGGGAAAATCGACATGCAGCTCAAACTCGTCCCTGGAAACTCCGCCG 299
Query 300 GAACCGTCACCGCCTACTACTTGAAGTCGAAAGGTGATACGTGGGACGAAATCGATTTCG 359
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 GAACCGTCACTGCCTACTACTTGAAGTCAAAAGGTGATACGTGGGACGAAATCGATTTCG 359
Query 360 AGTTTCTTGGTAATCTAACTGGTGATCCGTATACCATGCATACGAATGTGTATACTCAAG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTTTCTTGGTAATCTAACTGGTGATCCGTATACCATGCATACGAATGTGTATACTCAAG 419
Query 420 GCAAAGGTGATAGAGAACAACAATTCCATCTCTGGTTCGATCCAACCGCTGATTTCCACA 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 420 GCAAAGGTGATAGAGAACAACAATTTCATCTCTGGTTCGATCCAACCGCTGATTTCCACA 479
Query 480 CTTACTCTGTTTTATGGAACCCTCATCACATCGTTTTCATGGTTGATGATATTCCGGTAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTACTCTGTTTTATGGAACCCTCATCACATCGTTTTCATGGTTGATGATATTCCGGTAA 539
Query 540 GAGAATTCAAGAATCTACAACATATGGGTATTCC-GTATCCAAAATTGCAGCCGATGAGG 598
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 540 GAGAATTCAAGAATCTACAACATATGGGTAT-CCAGTATCCAAAATTGCAGCCGATGAGG 598
Query 599 CTATACTCGAGTCTATGGAACGCGGACCAGTGGGCTACAAGGGGAGGTCTTGTTAAGACT 658
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 TTATACTCGAGTCTATGGAACGCGGACCAGTGGGCTACAAGGGGAGGTCTCGTTAAGACT 658
Query 659 GACTGGTCCAAGGCACCATTCACCGCTTCTTACAGGAACTTTAGGGCGGATGCATGTGTT 718
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 659 GACTGGTCCAAGGCACCATTCACCGCTTCTTACAGAAACTTTAGAGCGGATGCATGTGTT 718
Query 719 TCCTCGGGCGGAAGATCATCTTGTCCCGCCGGTTCACCTAGATGGTTCTCTCAAAGGCTT 778
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 TCCTCGGGCGGAAGATCATCTTGTCCTGCCGGTTCACCTAGATGGTTCTCTCAAAGGCTT 778
Query 779 GATCTAACAGCAGCAGATAAGATGAGAGTGGTGCAGAGGAAGTACATGGTCTATAACTAT 838
||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 GATCTAACAGCGGAAGATAAGATGAGAGTGGTGCAGAGGAAGTACATGATCTATAACTAT 838
Query 839 TGTACAGACACCAAAAGGTTTCCTCAAGGATTTCCAAAGGAGTGTAGACACTAGCTACGG 898
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGTACGGACACCAAAAGGTTTCCTCAAGGATTTCCAAAGGAGTGTAGACACTAGCTACGA 898
Query 899 GAATTAATGTTTGATCCGAAACTCCAAAGCTAGTAGTATGTAGATTCGTCCAAATTATAT 958
|||||||||| |||||||||||||||||||||||| | | ||| |||||| |||||||||
Sbjct 899 GAATTAATGTGTGATCCGAAACTCCAAAGCTAGTATTGTATAGGTTCGTCTAAATTATAT 958
Query 959 ATGTAATGTTTATGTTTATTTAGTTTCTGTATTAAGCAATTTCCCCTGTTTCTGTGTAGA 1018
||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 959 ATGTAATGTTTATGTTTATTTAGGTTCTGTAATAAGCAATTTCCCCTGTTTCTATGTAGA 1018
Query 1019 TATTGTCATAATAAAATGGGCGTGTGTTA 1047
|||| ||||||||||||||||||| ||||
Sbjct 1019 TATTCTCATAATAAAATGGGCGTGAGTTA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51439766528
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5