BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495855
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57580.1 | Symbols: | Calmodulin-binding protein | chr5:233... 3541 0.0
> AT5G57580.1 | Symbols: | Calmodulin-binding protein | chr5:23314716-23318125
REVERSE LENGTH=2434
Length=2434
Score = 3541 bits (1917), Expect = 0.0
Identities = 2213/2351 (94%), Gaps = 39/2351 (2%)
Strand=Plus/Plus
Query 1 GAGTCGCCATAGTTGACCGATTAACCCAAAATTGCGAAGACTCAAAACAAAGAGACTGTC 60
||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | |
Sbjct 4 GAGTCGCCACAGTTGACCGATTAACCCAAAACTGCGACGACTCAAAACAAAGAGA-T-AC 61
Query 61 TCGAAAACTATCATCAAAA----AA---TC----CACTACTAATCATTGTTTCAATCCAA 109
| | ||||||||||||| || || ||||||||||||||||| |||| |||
Sbjct 62 T---ATACTATCATCAAAACTCCAATTCTCTATTCACTACTAATCATTGTTCCAATTCAA 118
Query 110 CGCCGCTGGTTTTTAATCGGCGAGTTACTCTCTGCTTTCTCCGTCTCCGATTAACTGATC 169
||||| ||| |||||||||||||| |||||||| |||||| ||||||||||||||||||
Sbjct 119 CGCCGGTGGCTTTTAATCGGCGAGACACTCTCTGATTTCTCGGTCTCCGATTAACTGATC 178
Query 170 TAGGtttttttttGGGAGGAGAATGCAGAGGTAGATGATGGATAGAGGTAATAATAATAT 229
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 179 TAGGTTTTTTTTGGGGAGGAGAATGCAAAGGTAGATGATGGATAGTGGTAATAATAATAT 238
Query 230 GAATAGAGCAAAGAGGAATTTGGATGGGAACGATGATGATCAGCCTGAGCGAAAACGTCC 289
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 GAATAGAGCCAAGAGGAATTTGGATGGGAACGATGATGATCAGCCTGAGCGAAAACGCCC 298
Query 290 TGCTCTTGCTAGTGTCATTGTTGAGGCTCTTAAAGTAGACAGTTTGCAGAAGCTTTGTTC 349
|||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 299 TGCTTTTGCTAGTGTGATTGTTGAGGCTCTGAAAGTAGATAGTTTGCAGAAGCTTTGCTC 358
Query 350 GTCTTTGGAACCTATTCTTCGCCGAGTTGTCAGCGAGGAAGTGGAACGTGCTTTAGCGAA 409
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||
Sbjct 359 CTCTTTGGAACCTATTCTCCGCCGAGTTGTCAGCGAGGAACTGGAACGTGCTTTAGCAAA 418
Query 410 ACTAGGTCCTGCTAGGCTTACTGGAAGTTCTGGG-TCTTCTCCTAAGCGAATTGAAGGTC 468
|||||| ||||||||||||||||||||||| ||| |||||||| ||||||||||||||||
Sbjct 419 ACTAGGCCCTGCTAGGCTTACTGGAAGTTC-GGGCTCTTCTCCAAAGCGAATTGAAGGTC 477
Query 469 CAGATGGTCGGAATTTACGGTTGCACTTCAAATCTAGGTTATCTCTCCCCTTATTCACTG 528
| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 CGGATGGTCGGAAGTTACAGTTGCACTTCAAATCTAGGTTATCTCTCCCGTTATTCACTG 537
Query 529 GAGGGAAAGTAGAAGGAGAGCAAGGTGCTGCAATTCATGTCGTCTTGATTGATGCAAACA 588
| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 538 GGGGGAAAGTAGAAGGAGAGCAAGGTGCTGTGATTCATGTTGTCTTGATTGATGCAAACA 597
Query 589 CGT-GTCGTGCTGTGGTATATGGTCCAGAGGCTTCAGCAAAGCTTCAGGTTGTTGTGCTT 647
| | | ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 598 C-TGGCCGTGCTGTGGTATATGGTCCAGAGGCTTCGGCAAAGCTTCACATTGTTGTGCTT 656
Query 648 GAGGGTGACTTTAACACTGAAGATGATGAAGACTGGACACAGGAAGAATTTGAAAGCCAT 707
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 GAGGGTGACTTTAACACTGAAGATGATGAAGACTGGACACAAGAAGAATTTGAAAGCCAT 716
Query 708 GTGGTGAAAGAGCGTTCAGGAAAGAGACCGTTGCTGACTGGAGATGTGTATGTTACTCTC 767
|| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 717 GTTGTAAAAGAGCGTTCAGGAAAGAGACCGTTGCTGACTGGAGAAGTGTATGTTACACTC 776
Query 768 AAGGAAGGAGTTGGAACTTTGGGCGAGCTAGTTTTCACGGATAATTCGAGTTGGATTCGA 827
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AAGGAAGGGGTTGGAACTTTGGGCGAGCTAGTTTTCACGGATAATTCGAGTTGGATTCGA 836
Query 828 AGTCGGAAGTTCCGACTTGGTTTACGGGTGGTTTCTGGGTATTGTGATGGCATGCGTATC 887
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 837 AGTCGGAAGTTCCGACTTGGTTTACGGGTGGTTTCTGGGTGTTGTGATGGCATGCGTATC 896
Query 888 CGTGAGGCGAAGACGGAAGCTTTTATTGTTAAGGATCACAGGGGCGAATTGTACAAGAAA 947
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 CGTGAGGCCAAGACGGAAGCTTTTGTTGTTAAGGATCACAGGGGCGAATTGTACAAGAAG 956
Query 948 CATTATCCACCTGCTTTGAATGATGATGTGTGGAGATTGGAGAAGATCGGCAAGGATGGG 1007
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 957 CATTATCCACCTGCTCTGAATGATGATGTGTGGAGATTGGACAAGATCGGCAAGGATGGG 1016
Query 1008 GCATTCCATAAAAAGCTTAATGCTGAAGGAATAAATACTGTAGAAGATTTTCTGAGAATA 1067
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1017 GCATTCCATAAAAAGCTTACTGCTGAAGGAATAAACACTGTAGAAGATTTTCTGAGAGTA 1076
Query 1068 ATGGTCAAGGATGCTCCAAAATTACGTTCTATTCTTGGAAGCGGCATGTCAAACAAAATG 1127
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1077 ATGGTCAAGGATTCTCCAAAATTACGTACTATTCTTGGAAGCGGCATGTCAAACAAAATG 1136
Query 1128 TGGGATGCACTAGTAGAGCACGCAAAGACGTGTGTCTTGAGCGGCAAGCTTTATATCTAC 1187
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1137 TGGGATGCACTAGTAGAGCACGCAAAGACGTGTGTCCAGAGCAGCAAGCTTTATATCTAC 1196
Query 1188 TATGCTGAGGATTCAAGGAATGTCGGTGTTGTGTTCAATAATATCTACGAGCTAAGCGGC 1247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1197 TATGCTGAGGATTCAAGGAATGTCGGTGTTGTGTTCAATAATATCTATGAGCTAAGCGGC 1256
Query 1248 CTTATTTCTGGAGATCAATACTTCTCTGCTGATTCACTTACTGACAGCCAAAAGGTATAT 1307
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1257 CTTATTTCTGGAGATCAATACTTCTCTGCTGATTCACTTACTGATAGCCAAAAGGTATAT 1316
Query 1308 GTTGATGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCATAGAGTATGATGGA 1367
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAGTCATAGAGTATGATGGA 1376
Query 1368 AAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGTTGAGTATTACTCACACTGATCTGGAA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 AAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGTTGAGTATTACTCACACTAATCTGGAA 1436
Query 1428 AATTACTCTACTGCCGCCATTGACCATCCAATGCAGATGG---CAGGGCATTCATCTTCA 1484
|||||||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1437 AATTACTCGACTGCTGCCATTGACCATCCAATGCAGATGGTGGCAGGGCATTCGTCTTCA 1496
Query 1485 ATGCCGGCTAACCAGCCTCCAGTGCTTTCAGATTTTGCTATTGGAGGGTATGATCAAACT 1544
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATGCCGCCTAACCAGTCTCCAGTGCTTTCAGATTTTGCTATTGGAGGGTATGATCAAACT 1556
Query 1545 CTGGCAACAAGATATCATTCGCAGCCCCAGCTTTTGAACTCCAACCCACGAGCACAATTT 1604
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1557 CTGGCAACAAGATATCATTCGCATCCCCAGCTTTTAAACTCCAACCCGCGAGCACAATTT 1616
Query 1605 GAGGTTGCTTCATGCAGTACAGCGCAAGACCAGTTCATGGGAAATCTACATCACACTCAA 1664
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1617 GAGGTTGCTTCATGCAGTACATCGCAAGACCAGTTCATGGGAAATCTACATCAAACTCAA 1676
Query 1665 AGCACCATACACAATCAAAACATGAATGGTCTTGCTCTCGGTCCTCCACAACCATCCACA 1724
||||||||| |||||||| |||||||||| || |||||||||||| ||||| ||||||||
Sbjct 1677 AGCACCATAAACAATCAACACATGAATGGCCTGGCTCTCGGTCCTTCACAATCATCCACA 1736
Query 1725 AGCGGATACCAAAACATCAACTCTTCTACTGTTCACCAGGCAAATCTCAATCATTTAGAA 1784
||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct 1737 AGCGGATACCAAAACATCAACCCTTCTTCTGTTCACCAGGCAGATCTCAACCATTTAGAA 1796
Query 1785 GACTGGTCAAACCCCCGTGAGAGAGGACCAGAAGATTTCTTCTCAGAGGAAGAGATCCGA 1844
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1797 GACTGGTCAAACCCCCGTGAGAGAGGACCAGATGATTTCTTCTCAGAGGAAGAGATCCGA 1856
Query 1845 CTCAGAAGCCATGAAATGCTCGAGAGCGAAGACATGCAACAGTTCCTCCGCCTATTCAGC 1904
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1857 CTCAGAAGCCATGAAATGCTAGAGAGTGAAGACATGCAACAGTTCCTCCGCCTATTCAGC 1916
Query 1905 ATGGGAGGAGGAGGCAACGGCTCTGCAACACACTTGCCAGAAGATGGATATACTTTCCCA 1964
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 ATGGGAGGAGGAGGCAATGGCTCTGCAACACACTTGCCAGAAGATGGATATACTTTCCCA 1976
Query 1965 TCGTTTCTACACACACCTATGCAAGGTTATGATGAAGACCGTGGTCGATCAGGCAGAGCT 2024
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 TCGTTTCTACACACGCCTATGCAAGGTTATGATGAAGACCGTGGTCGATCAGGCAGAGCT 2036
Query 2025 GTTGTTGGATGGCTTAAGATAAAAGCAGCAATGAGATGGGGGTTCTTCATCAGGAGGAAA 2084
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2037 GTTGTTGGATGGCTTAAGATAAAAGCCGCAATGAGATGGGGGTTCTTCATCAGGAGGAAA 2096
Query 2085 GCTGCTGAGAGGCGAGCACAGATTGTAGAGCTtgatgatgatgatgatgaAGATGGCGAA 2144
|||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 2097 GCTGCTGAGAGGCGAGCACAAATTGTAGAGCTTGATGATGATGATGA--A-GATGGCGAA 2153
Query 2145 TAGTGTATAAAAGGAAGTGTACAGTTAGAGTCAGTGGAT--GTG--TGT-T-T-T---AT 2194
||||||||||||||||||||||||||||| ||||||||| ||| ||| | | | ||
Sbjct 2154 TAGTGTATAAAAGGAAGTGTACAGTTAGATTCAGTGGATCTGTGGATGTGTGTGTTTTAT 2213
Query 2195 GAAGCAGGAGACTTCTAATATGCTTGATTGATGA---CTCATTTAGACAGTAGCATTCTT 2251
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2214 GAAGCAGGAGACTTCTAATATGCTTGATTGATGATAACTCATTTAGACAGTAGCATTCTT 2273
Query 2252 AAGAACTGGTTCTACAGTCTTAGATATATGATTCAACAAGTAGGATTTATGTCTGGTCCT 2311
|||||||| |||||||||||||||||| ||||||||||||||| |||| ||| |||||||
Sbjct 2274 AAGAACTGATTCTACAGTCTTAGATATGTGATTCAACAAGTAGAATTTCTGTATGGTCCT 2333
Query 2312 TTAATTTGATG 2322
|| ||||||||
Sbjct 2334 TTTATTTGATG 2344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5