BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495856
Length=2608
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57590.1 | Symbols: BIO1 | adenosylmethionine-8-amino-7-oxon... 3943 0.0
> AT5G57590.1 | Symbols: BIO1 | adenosylmethionine-8-amino-7-oxononanoate
transaminases | chr5:23318508-23322770 REVERSE LENGTH=2670
Length=2670
Score = 3943 bits (2135), Expect = 0.0
Identities = 2451/2601 (94%), Gaps = 32/2601 (1%)
Strand=Plus/Plus
Query 16 TTTCGAGCTAAACA---CTCGCTCTCTCCGCCACTTCACTATCCCATTCCCACCCACCAA 72
|||||||||||||| ||| |||||||||||||||||||||| || ||||||| |||||
Sbjct 23 TTTCGAGCTAAACACTCCTCTCTCTCTCCGCCACTTCACTATCACA-TCCCACCTACCAA 81
Query 73 CAATGATTCCCGTAACCGCCACTCTCATCCGCCACCGTCCCCGGCACTTACGCCACCGCA 132
||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 82 CAATGATACCCGTAACCGCCACTCTTATCCGCCACCGTCTCCGGCACTTACGCCACCGCA 141
Query 133 -TCAGATTCAACTCCACCGCTGTTTCTCCTCCTCCTACTCACTCTATCCATTTACCACTC 191
|| ||||||| |||| | | ||| | | | ||| || | ||||||||||||||
Sbjct 142 TTC-GATTCAAATCCA-C-C----TCT-GT--T--T-CTC-CT-T-TCCATTTACCACTC 185
Query 192 AACCACCCTACCTACTTAATTTGGTCAGCCAACACTTCTCTCGGCAAAACCCTCGTCTCT 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 AACCACCCTACCTACTTAATTTGGTCAGCCAACACTTCTCTCGGCAAAACCCTCGTCTCT 245
Query 252 ACCGGCATCGCCGCCTCTTTCCTCCTCCAACAACCTTCTTCTTCCGCCAAAAAACTCCTC 311
|| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 246 ACAGGCATCGCCGCCTCTTTCCTCCTCCAGCAACCTTCATCTTCCGCCACAAAACTCCTC 305
Query 312 TATTTGAAACCTATTCAGACCGGCTTCCCTTCCGATTCCGATTCTCGTTTCGTCTTCTCC 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TATTTGAAACCTATTCAGACCGGCTTCCCTTCCGATTCCGATTCTCGTTTCGTCTTCTCC 365
Query 372 AAGCTCGATTCACTCTCCCTCCGTCGCCAAATCCCTCTTTCTATCTCAAACTCTGTTCTC 431
||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| |||
Sbjct 366 AAGCTCGATTCCCTCTCCCTCCGTCGCCAAATCCCTATTTCAATCTCCAACTCTGTCCTC 425
Query 432 CGTTCTTCACTCCCCGCCGCAGAATCTCTGGGATTGAATGTTGAAGTCAGCGAGAGTGGG 491
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 426 CATTCTTCACTCCCCGCCGCAAAATCTCTGGGATTGAATGTTGAAGTCAGCGAGAGTGGG 485
Query 492 ATGTG-TAATTTGAACTTCCGGGAGGAGAAGACTGTCACCGGCGCACCGGAACTTTTGTG 550
||||| | |||||| |||||||| ||||| || ||||| || |||||||||||||| ||
Sbjct 486 ATGTGCT-CTTTGAATTTCCGGGATGAGAAAACCGTCACTGGAGCACCGGAACTTTTATG 544
Query 551 CAAGACGTTGTATGCTTGGGAAGCAGCTATCTCTCCGCATTTAGCTGCGGAGAGGGAAAA 610
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 545 CAAGACGTTGTATGCTTGGGAAGCAGCTATATCTCCGCATTTAGCTGCGGAGAGAGAAAA 604
Query 611 CACTACGATTGAAGACTCCGTCGTGTTACGGATGATTGAAAAGTGTTTAAAGGAAGAGAT 670
| | ||| | || |||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 605 CGCGACGGTCGAGGACTCCGTCGTGTTACAGATGATTGAAAAGTGTTTGAAGGAAGAGAT 664
Query 671 GGAGTGTGGAAG-TAAAAGCGAGAAATCGGATTTACTATGTTTGGTGGAGACTGCCGGTG 729
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GGAATGTGG-AGTTAAAAGCGAGAAATCGGATTTACTATGTTTGGTGGAGACTGCCGGTG 723
Query 730 GAGTTGCTAGTCCTGGACCGTCGGGAACTCTTCAATGCGACCTCTACAGGCCTTTTAGAT 789
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GAGTTGCTAGTCCTGGTCCGTCGGGAACTCTTCAATGCGACCTCTACAGGCCTTTTAGAT 783
Query 790 TGCCCGGAATTCTTGTCGGAGATGGTCGACTCGGTGGTATCTCAGGGACTATTGCAGCTT 849
| || ||||||||||| |||||||| || || ||||||||||||||||||||||||||||
Sbjct 784 TACCTGGAATTCTTGTTGGAGATGGGCGGCTTGGTGGTATCTCAGGGACTATTGCAGCTT 843
Query 850 ACGAGAGTTTAAAACTTCGTGGATACGATATTGCTGCTGTTGTTTTTGAAGATCATGGCC 909
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 844 ACGAGAGTTTAAAACTTCGAGGATATGATATTGCTGCTGTTGTTTTTGAAGATCATGGCC 903
Query 910 TTGTTAATGAAGTTCCATTAACTTCATATCTAAGGAATAAGGTGCCGGTGCTTGTGCTTC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTGTTAATGAAGTTCCATTAACTTCATATCTAAGGAATAAGGTGCCGGTGCTTGTGCTTC 963
Query 970 CGCCAATTCCCAAGGACCCTTCAGATGATCTAATAGAATGGTTTGTCGAATCCAATGGTG 1029
|||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 964 CGCCTGTTCCCAAGGACCCTTCAGATGATCTTATTGAATGGTTTGTCGAATCCGATGGTG 1023
Query 1030 TTTTCAAAGCTTTGAAAGAAACAATGGTGTTAGCTTATTTGGGGAGATTAGAAAGATTAA 1089
||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 1024 TTTTCAAAGCTTTGAAAGAAACAATGGTGTTAGCTAATTTGGAGAGATTGGAAAGATTAA 1083
Query 1090 ACGGCATGGCCAAGCAAGCAGGAGAGGTTTTCTGGTGGCCATTTACTCAGCATAAACTTG 1149
| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ATGGCATGGCTAAGCTAGCAGGAGAGGTTTTCTGGTGGCCATTTACTCAGCATAAACTTG 1143
Query 1150 TACATGAAGAAACTGTGACGGTTATAGACTCCCGATGTGGTGAAAATTTCTCAATATACA 1209
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TGCATCAAGAAACTGTGACGGTTATAGACTCCCGATGTGGTGAAAATTTCTCAATATACA 1203
Query 1210 AGGCTTCCGATAACAGTTCTCTTACCCAGCAATTTGATGCTTGTGCAAGCTGGTGGACAC 1269
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1204 AGGCTTCCGATAACAGTTCTCTTAGCCAGCAATTTGATGCTTGTGCAAGCTGGTGGACAC 1263
Query 1270 AGGGGCCAGATCCTACTTTCCAGGCTGAGCTTGCTAGAGAAATGGGTTACACTGCTGCTA 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AGGGGCCAGATCCTACTTTCCAGGCTGAGCTTGCTAGAGAAATGGGTTACACTGCTGCTA 1323
Query 1330 GGTTCGGGCATGTTATGTTCCCTGAAAATGTATATGAACCTGCCTTAAAATGTGCTGAGC 1389
|||| |||||||||||||||||||| |||||||||||||||||||| || || |||||||
Sbjct 1324 GGTTTGGGCATGTTATGTTCCCTGAGAATGTATATGAACCTGCCTTGAAGTGCGCTGAGC 1383
Query 1390 TCTTATTAGATGGAGTGGGAAAAGGCTGGGCTTCTCGAGTTTACTTCTCGGATAATGGAT 1449
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1384 TGTTATTAGATGGAGTGGGAAAAGGCTGGGCTTCTCGAGTATACTTCTCGGATAATGGAT 1443
Query 1450 CCACAGCAATCGAAATTGCCTTGAAGATGGCATTTCGTAGGTTTTGTGTCGATCATGATT 1509
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1444 CCACAGCAATCGAAATTGCCTTGAAGATGGCATTTCGTAAGTTTTGTGTCGATCATAATT 1503
Query 1510 TTTGCGAGAAAAGGGAAGAGAAAAAGCATATTGTGGTTAAGGTCCTAGCTCTTCGGGGGT 1569
|||||||| | |||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1504 TTTGCGAGGCTACAGAAGAGGAAAAGCATATTGTGGTTAAGGTCATAGCTCTTCGGGGGT 1563
Query 1570 CTTACCATGGGGATACTTTAGGAGCGATGGAAGCACAAGCACCATCGCCTTATACAGGCT 1629
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1564 CTTACCATGGAGATACTTTAGGAGCAATGGAAGCACAAGCACCATCACCTTATACAGGCT 1623
Query 1630 TTCTCCAGCAGCCGTGGTATACTGGAAGAGGCCTGTTTCTGGATCCTCCTACTGTCTTTC 1689
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1624 TTCTCCAGCAGCCGTGGTATACTGGAAGAGGCTTGTTTCTGGATCCTCCTACTGTCTTTC 1683
Query 1690 TCTCCAATGGAGCCTGGAATATCTCCCTCCCTGAAAGTTTTTCTGAAATAGCCCCAGAAG 1749
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 TCTCCAATGGATCCTGGAATATCTCCCTCCCTGAAAGTTTTTCTGAAATAGCCCCAGAA- 1742
Query 1750 AATATGGAACCTTCACCATCCGTGATGAAATTTTTGACGAGAGCAGAGACGCAACAACTC 1809
|||||||||||||||| ||||||||| ||||||||| |||| ||||||||| ||||||
Sbjct 1743 --TATGGAACCTTCACCAGCCGTGATGAGATTTTTGACAAGAGTAGAGACGCATCAACTC 1800
Query 1810 TTGCAAGAATATATTCAGCCTATGTATCAGA-GCATTTACAAGAGCATTCTGGAGTTAGG 1868
|||||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||
Sbjct 1801 TTGCAAGAATATATTCGGCCTATTTATC-GAAGCATTTACAAGAGCATTCTGGAGTTAGG 1859
Query 1869 CAATCTGCCCATGTTGGAGCACTGATAATAGAACCAGTAATTCATGGTGCTGGGGGAATG 1928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CAATCTGCCCATGTTGGAGCACTGATAATAGAACCAGTAATTCATGGTGCTGGGGGAATG 1919
Query 1929 CACATGGTTGATCCGCTTTTCCAACGAGTTTTGGTCAATGAGTGCCGGAATAGAAAAATT 1988
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1920 CATATGGTTGATCCGCTTTTCCAACGAGTTTTGGTGAATGAGTGCCGGAATAGAAAAATT 1979
Query 1989 CCAGTCATTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGACTACTGCT 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1980 CCAGTCATTTTCGATGAAGTGTTCACAGGATTCTGGCGTCTTGGAGTAGAGACTACTACT 2039
Query 2049 GATCTTCTCGACTGCAAACCGGACATAGCTTGCTTCGCCAAATTGTTGACTGGTGGAATG 2108
|| ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2040 GAACTTCTCGGTTGCAAACCGGACATAGCGTGCTTTGCCAAATTGTTGACTGGTGGAATG 2099
Query 2109 GTTCCTTTGGCTGTCACTCTTGCCACAGATGCTGTATTCGATTCATTTTCTGGAGATTCC 2168
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GTTCCTTTGGCTGTCACTCTTGCCACAGATGCTGTATTCGATTCATTTTCTGGAGATTCT 2159
Query 2169 AAGCTTAAAGCCTTGCTTCATGGTCACTCATACTCAGCACATGCTATGGGTTGCGCAACA 2228
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2160 AAGCTTAAAGCCTTGCTTCATGGTCACTCATACTCAGCTCATGCTATGGGTTGCGCAACA 2219
Query 2229 GCGGCCAAAGCAATCCAATGGTTCAAAGATCCAGAGACTAACCATAACATCACTTCACAA 2288
|| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2220 GCCGCCAAAGCCATCCAATGGTTCAAAGATCCAGAGACTAACCACAACATCACTTCACAA 2279
Query 2289 GGAAAAACCTTAAGAGAGCTGTGGGACGAAGAACTGGTGCAACAAATATCATTTCACTCC 2348
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2280 GGAAAAACTTTAAGAGAGCTGTGGGACGAAGAACTGGTGCAACAAATATCATCTCACTCT 2339
Query 2349 GCGGTTCAAAGGGTGGTTGTAATAGGAACCCTTTTCGCTCTAGAACTAAAAGCAGATGCT 2408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2340 GCGGTTCAAAGGGTGGTTGTAATAGGAACCCTTTTCGCTCTAGAACTAAAAGCAGATGCT 2399
Query 2409 TCCAATTCCGGGTATGCTTCGTTGTATGCAAAGTCTCTTCTAGAGA-TGCTCCGAGAAGA 2467
|||||||| ||||||||||||||||||||||||||||||||| | | |||| || |||||
Sbjct 2400 TCCAATTCAGGGTATGCTTCGTTGTATGCAAAGTCTCTTCTA-ATAATGCTTCGGGAAGA 2458
Query 2468 CGGAATCTTCACGCGCCCTCTCGGCAACGTTATTTATCTCATGTGTGGCCCTTGCACCTC 2527
||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 2459 CGGTATCTTTACCCGGCCTCTTGGAAACGTTATCTATCTCATGTGTGGCCCTTGCACCTC 2518
Query 2528 GCCGGAAATTTGCCGCCGGTTACTCACTAAGCTCTACAAAAGGCTCGGAGAATTCAACAG 2587
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 2519 GCCGGAAATTTGCCGCCGGTTGCTCACGAAGCTCTACAAAAGGCTCGGAGAATTCAATAG 2578
Query 2588 AACATGAAACCCAAAACTCTC 2608
|||||||||||||||||||||
Sbjct 2579 AACATGAAACCCAAAACTCTC 2599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129480879883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5