BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495859
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57625.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 1297 0.0
AT4G25790.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 348 6e-95
> AT5G57625.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr5:23337850-23338807 FORWARD LENGTH=869
Length=869
Score = 1297 bits (702), Expect = 0.0
Identities = 802/850 (94%), Gaps = 8/850 (1%)
Strand=Plus/Plus
Query 1 ACCACCCACAAAACCATGGCGACCACTTCCTCGACGACACAAGTCATTGTCTTCACAATT 60
|||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1 ACCACCCACAAAGCCATGGCGACCACTTCATCGACAAAACAAGTCATTGTCTTCACAATT 60
Query 61 TCCCTTCTCTTGGTTGCTTTCCAAGCAGTCCATGCAGACTATTACCGTCAGAGGCCACCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCCTTCTCTTGGTTGCTTTCCAAGCAGTCCATGCAGACTATTACCGTCAGAGGCCACCG 120
Query 121 GTTACCCCTACCCCTTACGTCCCTAAGCCACGAGT-CCCACTTCCAAGCCCGAGCCCCAA 179
|||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||
Sbjct 121 GTTACCCCTACCCCTTACGTTCCTAAGCCACG-GTACCCACTTCCGAGCCCGAGCCCCAA 179
Query 180 GCCTGTCTATCGGCCTCCTACTACACCTACTCTACCCGCTGGCTCAATCGCTAGACTGTT 239
|||||| ||||| || |||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 180 GCCTGTTTATCGACCACCTACTACCCCTAGTCTACCCGCTGGCTCAATCGCTAGACTATT 239
Query 240 CCTTGATCCACATAACGCTCTTCGGTCCAGACTAGGTTTGTATCCATTGGTTTGGGACGG 299
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 240 CCTTGATCCACATAACGCTCTTCGGTCCGGACTAGGTTTGCCTCCATTGATTTGGGACGG 299
Query 300 CAAGCTAGCGAGCTACGCG-CAATGGTGGGCTAACCAGAGGCGTTACGACTGCTCTTTAA 358
|| |||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 300 TAAACTAGCGAGCTACGCAACA-TGGTGGGCTAACCAGAGGCGTTACGACTGCTCCTTAA 358
Query 359 CCCATTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCTCGAGCTGGGCAC 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCCATTCCACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCTCGAGCTGGGCAC 418
Query 419 CAGGTTTCGCGGTGCAGTCATGGATCGTTGAAGGAAGGTCTTACAACTACAACACCAACT 478
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 419 CAGGTTTCGCGGTGCAGTCATGGATCGTTGAAGGAAGGTCATACAACCACAACACCAACT 478
Query 479 CCTGTGACGGAAGTGGAATGTGTGGTCACTACACTCAGATGGTGTGGCGTGACACCAAAA 538
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CGTGTGACGGAAGTGGAATGTGTGGTCACTACACTCAGATGGTGTGGCGGGACACCAAAA 538
Query 539 GGCTCGGATGCGCACGTGTGGTTTGTGAGAACGGCGCCGGAGTTTTCATCACTTGTAACT 598
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 539 GGCTCGGATGCGCACGTGTGGTGTGTGAGAACGGTGCCGGAGTTTTCATCACTTGTAACT 598
Query 599 ACGACCCACCGGGTAACTACGTTGGCGAGAGGCCTTACTaaaaaaaCAAA-CACGTTAAA 657
|||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||
Sbjct 599 ACGACCCACCGGGTAACTACGTTGGCGAGAAGCCATACTAAAAAAACAAAACACATTAAA 658
Query 658 CGGG-TTTTTGTTTGGTACTTGATTTCATTTAATTTCTTTTCTATATGTTTTCAATATAT 716
|||| ||||||||||||| ||||||||||||||| |||||| ||| ||||||| |||||
Sbjct 659 CGGGGTTTTTGTTTGGTATTTGATTTCATTTAATATCTTTTGTATCTGTTTTCGTTATAT 718
Query 717 CTTCGTGAAATTAAAATTTCCGACAGATCTAATTTGTATGTATCATTGTATGTTGTTGTT 776
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 CTTCGTGAAATTAAAATTTCCGACAAATCTAATTTGTATGTATCATTGTATGTTGTTGTT 778
Query 777 TCCGATGTCCTGTCGGTCATGTCCTCAAAATTTTGTTGAGTGGCCTTA-TTATGTAAACA 835
||| ||||||| |||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 779 TCCAATGTCCTCTCGGTCATGTCCTCAAAATTTTGTTGAGTGGCCT-ACTTATTTAAACA 837
Query 836 TCGTAAAACA 845
||||||||||
Sbjct 838 TCGTAAAACA 847
> AT4G25790.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr4:13122152-13123347 REVERSE LENGTH=786
Length=786
Score = 348 bits (188), Expect = 6e-95
Identities = 510/659 (77%), Gaps = 48/659 (7%)
Strand=Plus/Plus
Query 10 AAAAC-CATGGCGACCACTTCCTCGACGACACAAGTCATTGTCTTCACAATTTCCCTTCT 68
||||| ||||||||||| | || | || |||| ||| || ||| |||| ||||| |
Sbjct 51 AAAACAGATGGCGACCACAACATC-A--ACCCAAGCCATAGTTTTCGCAATCGCCCTTTT 107
Query 69 CTTGGTTGCTTTCCAAGCAGTCCATGCAGACTATTACCGTCAGAGGCCAC--CG--GT-T 123
|||||| || ||||||| || ||||||||||||||||| || | |||| || | |
Sbjct 108 CTTGGTCGCCATCCAAGCCGTTCATGCAGACTATTACCGGCACCGCCCACAGCGACCTAT 167
Query 124 -ACCCCTA--CC-CCT---TACGTCCCTAAGCCACGAGTCCCACTTCCAAGC-CCGAGCC 175
||||| | || ||| ||||| | ||||| | || || || |||| | || ||||
Sbjct 168 AACCCCGAGCCCTCCTCCCTACGTTGCAAAGCC-CCAG--CCGCTCCCAA-CTCCCAGCC 223
Query 176 CCAAGCCTGT-C--TATCGGCCTCCTACTAC--ACCTACTCTACCCGCTGGCTCAATCGC 230
|||| ||| | | |||| ||||||| | || ||| || | |||| | ||||| |||
Sbjct 224 CCAAACCTATCCTTTATCAGCCTCCTCCCACATACCAAC-C-ACCCACGGGCTCGTTCG- 280
Query 231 TA-GACTGTTCCTTGATCCACATAACGCTCTTCG-GTCCAGACTAGGTTTGTATCCATTG 288
| || || |||||||||||||| || | || | | | ||||||||| |||| ||
Sbjct 281 AACAACAATTTCTTGATCCACATAATACTGTCCGAG-GCGGTCTAGGTTTGCCTCCACTG 339
Query 289 GTTTGGGACGGCAAGCTAGCGAGCTACGCGCA-ATGGTGGGCTAACCAGAGGCGTTACGA 347
|| ||||||| ||| | || ||||| || | ||||||||||||||||||| | |||||
Sbjct 340 GTGTGGGACGTAAAGATCGCAAGCTATGC-AACATGGTGGGCTAACCAGAGGAGATACGA 398
Query 348 CTGCTCTTTAACCCATTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCTC 407
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 399 CTGCTCCTTAACCCACTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTC 458
Query 408 -GAGCTGGGCACC-AGGTTTCGCGGTGCAGTCATGGA-TCGTTGAAGG--AAGGTCTTAC 462
|| || || | | |||||| ||| ||||||||| | || || || ||| || |||
Sbjct 459 AGA-CTTTACATCGAC-TTTCGCAGTGGAGTCATGGACT-GTGGA-GGCTAAG-TCCTAC 513
Query 463 AACTACAACACCAACTCCTGTGACGGA-AGTGGAATGTGTGGTCACTACACTCAGATGGT 521
||| ||| |||||| | ||||| ||| | ||| ||||||||||||||||||||||| ||
Sbjct 514 AACCACATGACCAACACGTGTGAAGGAGA-TGGTATGTGTGGTCACTACACTCAGATCGT 572
Query 522 GTGGCGTGACACCAAAAGGCTCGGATGCGC-ACGTGTGGTTTGTGAGAACGGCGCCGGAG 580
||||||||| |||| | || || ||||| | | || || || ||||||||||| ||||
Sbjct 573 GTGGCGTGAAACCAGGCGCCTAGGTTGCGCTA-GAGTTGTCTGCGAGAACGGCGCAGGAG 631
Query 581 TTTTCATCACTTGTAACTACGACCCACCGGGTAACTACGTTGGCGAGAGGCCTTACTaa 639
||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 632 TTTTCATCACTTGCAACTACGACCCTCCGGGTAACTACGTTGGGGAGAAGCCTTACTAA 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41192000540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5