BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495863
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23... 948 0.0
> AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23355464-23356989
FORWARD LENGTH=1437
Length=1437
Score = 948 bits (513), Expect = 0.0
Identities = 741/840 (88%), Gaps = 59/840 (7%)
Strand=Plus/Plus
Query 554 GTTCTTCTGAGTTTATGTTTTCTGATTTCGATCGTCTTATTGATTTCGAGTTTCCGAATT 613
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 618 GTTCTTCTGACTTTATGTTTTCTGATTTCGATCGGCTTATTGATTTCGAGTTTCCGAATT 677
Query 614 CGTTCAATCATCCGTCGCATAACAACGCCGGTGGAGATAGTCTTGTTCCGGTTCAGACGA 673
||||||||||| | | || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 678 CGTTCAATCAT-CAT--CAAAACAACGCCGGAGGAGATAGTCTTGTTCCGGTTCAGACGA 734
Query 674 AAACAGAGCCTCTTCCGTTAACTAACAATGATCATTGCTTCGATATAGATTTCTGCAGAT 733
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 735 AAACAGAGCCTCTCCCGTTAACTAACAATGATCATTGCTTCGATATTGATTTCTGCAGAT 794
Query 734 CAAAGCTCTCTGCTTTCACTTACCCTTCTCAATCAGTTAGCCACAGTGTTTCGACTTCGT 793
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 795 CAAAGCTCTCTGCTTTCACTTACCCTTCTCAATCAGTCAGCCACAGTGTTTCGACTTCTT 854
Query 794 CTATTGAATACGGTGTTGTTCCTGACGGAAACACAAACAACTCTGTTTCTGAAATCTCAG 853
|||||||||||||||| ||||||||||||||||| | || | || |||
Sbjct 855 CTATTGAATACGGTGTAGTTCCTGACGGAAACAC--A-AA--------C---AA-CTC-- 897
Query 854 TTCCGTTTAACCGGAGCACGATCACTACCTCGACGGCGGCGAGTACTGGTGATCATCAAA 913
| | ||||||||||||||||||||| ||||||| | | | |||||||||||||
Sbjct 898 -T--G-TTAACCGGAGCACGATCACTAGCTCGACGAC--TG-G---TGGTGATCATCAAG 947
Query 914 CGAGCTCCATGGATAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGGA 973
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CGAGCTCTATGGATAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGGA 1007
Query 974 AATTTGAGAAGACGATTCGTTATGCTTCGAGGAAAGCTTATGCAGAGTCACGGCCAAGGA 1033
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1008 AATTTGAGAAGACGATTCGTTACGCTTCGAGGAAAGCTTATGCAGAGTCACGGCCAAGGA 1067
Query 1034 TCAAAGGCCGGTTTGCGAAAAGAACAGAGACAGAAAACGACGACGTTTTCCTTAGTCATG 1093
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1068 TCAAAGGCCGGTTTGCGAAAAGAACAGAGACAGAAAACGACGACATTTTCCTTAGTCATG 1127
Query 1094 TTTATGCTTCAGCCGC-C--GCACAGTACGGTGTCGTACCAACGTTCTGAATTCGAATCT 1150
||||||||||||| || | |||||||||||||||||||||||||||||| |||||||||
Sbjct 1128 TTTATGCTTCAGCAGCACACGCACAGTACGGTGTCGTACCAACGTTCTGA-TTCGAATCT 1186
Query 1151 ACGGTGGATAAAGAATCAACTTGAAGACTTCCCATCTTTCACCGTCGATTTACCGTGGGT 1210
|||||||||||| ||||||| |||||||||| ||||| |||||| ||||||| || |||
Sbjct 1187 ACGGTGGATAAACAATCAACCTGAAGACTTCATATCTTCCACCGTTGATTTACAGTCGGT 1246
Query 1211 GTATAATAAGTATAGTGAGTCTTACCCTAGACAAACAT-T-A-C-t-ttt----ttt-AC 1260
|||||||||||||||||||||||||| ||||||||||| | | | | ||| ||| |
Sbjct 1247 GTATAATAAGTATAGTGAGTCTTACCGTAGACAAACATCTTATCCTCTTTACCGTTTTAA 1306
Query 1261 G--CTCTCTCTC-ACTGCCACTATAAAGGC---TGTAACtttttttttttttCTTTCTCT 1314
|| | | | || || || | | || ||||||| |||||||||||||| | ||
Sbjct 1307 TTACTTTTTTTTTAC-GCG-CTCTCACTGCCACTGTAACTCTTTTTTTTTTTCTT-C-CT 1362
Query 1315 TCTATAAATATGTATGCTTATTTTTATTTAGAAAATGTTATAAAATCATATAATTTGGTA 1374
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1363 ---ATA--TATGTATGCTTATTTTTATTTAGAAAATGTTATGAAATCATATAATTTGGTA 1417
Score = 826 bits (447), Expect = 0.0
Identities = 528/566 (93%), Gaps = 9/566 (2%)
Strand=Plus/Plus
Query 1 CATCGAAGCAAATCAAATACCCAACTCTCACACGTTCTCAAACCAAAACTTC--A-A-AG 56
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | | ||
Sbjct 1 CATCCAAGCAAATCAAATACCCAACTCTCACACGTTCTCAAACAAAAACTTCAAAGAGAG 60
Query 57 AGAGAGAGttttttttCTGAACTCAAGAAAGaaaaaaaaaaaaGAGTAGTTAATGGGATT 116
|||||||| |||| |||||||||| || || ||||||| | ||||||||||||||
Sbjct 61 AGAGAGAGAGAGTTTTGTGAACTCAAG-AA-AATAAAAAAAGTTA-TAGTTAATGGGATT 117
Query 117 CGGCTTAGAGAGTATCAAATCAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGA 176
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 118 CGGCTTAGAGAGTATCAAATCAATCTCCGGCGGATGGGGCGCGGCGGCGCGTTCCTGTGA 177
Query 177 CGCTTGTAAATCAGTAACCGCCGCCGTGTTCTGTCGACTTGACTCAGCTTTCTTATGCAT 236
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 CGCTTGTAAATCAGTTACCGCCGCCGTGTTCTGTCGAGTTGACTCAGCTTTCTTATGCAT 237
Query 237 ATCATGTGACACAAGAATCCATTCCTTCACTCGCCACGAGCGCGTGTGGGTTTGTGAAGT 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGCATGTGACACAAGAATCCATTCCTTCACTCGCCACGAGCGCGTGTGGGTTTGTGAAGT 297
Query 297 TTGCGAACAAGCTCCCGCCGCCGTCACTTGCAAAGCCGACGCCGCCGCTCTTTGCGTCAC 356
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGTGAACAAGCTCCCGCCGCCGTCACTTGCAAAGCCGACGCCGCCGCTCTTTGCGTCAG 357
Query 357 TTGTGATTCCGATATTCACTCAGCTAATCCACTCGCTAGCCGTCACGAACGTGTCCCCGT 416
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 358 TTGTGATGCCGATATTCACTCTGCTAATCCTCTCGCTAGCCGTCACGAACGTGTCCCCGT 417
Query 417 AGAGTCTTTCTTCGACTCAGCTGAAACCGCCGTCGCCAAAATCTCTCCTTCTTCGAGTTT 476
|| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 418 CGAAACTTTCTTCGACTCAGCCGAAACCGCCGTCGCCAAAATCTCAGCTTCTTCGACTTT 477
Query 477 TGGTATCCTTGGCTCATCCACCACCGTGGATTTAACCGCTGTTCCGGTTATGGGTGATGA 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 478 TGGTATCCTTGGCTCATCCACCACCGTTGATTTAACCGCTGTTCCGGTTATGGCTGATGA 537
Query 537 TCTCGGTTTATGTCCGTG-TT-CTTC 560
|||||||||||||||||| || ||||
Sbjct 538 TCTCGGTTTATGTCCGTGGTTACTTC 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5