BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495864
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57670.2 | Symbols: | Protein kinase superfamily protein | ... 2820 0.0
> AT5G57670.2 | Symbols: | Protein kinase superfamily protein
| chr5:23360400-23363757 REVERSE LENGTH=1934
Length=1934
Score = 2820 bits (1527), Expect = 0.0
Identities = 1729/1826 (95%), Gaps = 15/1826 (1%)
Strand=Plus/Plus
Query 1 GAATCATTGTGTTCTCAAAAATTCCGAACTTAGAGTGAGATAAGGGAGCAAAGGGCCAAT 60
||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||
Sbjct 1 GAATCATTGTGTTCTCAAAAATTCCGACCTTAGAGTGAGACAAGTGA-AAAAGGGCCAAT 59
Query 61 ACAAATGATATCTTGTTCAGACGAAGGTAGTAACAAGATCCTTGTGGCAATCTCGTTGGA 120
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 60 ACAAATGATATCTTGTTCAGAAGAAGGTAGTAACAAGATCCTTGTGGCGATCTCGTTGGA 119
Query 121 CCGCAACGAGAGCCAAAATGTTCTATCTTGGGCCATCAATGTTCTTGCTAAACCAAGTGA 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGTGACGAGAGCCAAAATGTTCTATCTTGGGCCATCAATGTTCTTGCTAAACCAAGTGA 179
Query 181 CACCATTGTGGCTCTTCATCTTCTTGTTGGTGAAGAACCGAGAAAATTGCCAATGAAGAA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACCGTTGTGGCTCTTCATCTTCTTGTTGGTGAAGAACCGAGAAAATTGCCAATGAAGAA 239
Query 241 GAAGAAGAGAACTCAGATTCGACATGCCAAAGCTCACGTTATCTCCATGCTTGGAGAGTT 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 GAAGAAGAGAACTCAGATTCGACATGCCAAAGCTCATGTTATCTCCATGCTTGGAGAGTT 299
Query 301 CGCTTACACTTGCTGCCACAACCAGGTGAATTTGGAAGCCAAGGTAGGGTTTACCTCAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 CGCTTACACTTGCTGCCACAACCAGGTGAATTTGGAAGCCAAGGTAGGGTTTAGCTCAAA 359
Query 361 CATTGGAAGAGGACTAATCAATGAAGTCAAATCGATTTCTGCTCATTATCTTGTTCTTTC 420
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CATTGGAAGAGGACTAATCGATGAAGTCAAATCCATTTCTGCTCATTATCTTGTTCTTTC 419
Query 421 TCGACCAACAACCCACGAATTCAGGATATGGAATGACATCACAAGATATGTCTCCGACTT 480
|||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||
Sbjct 420 TCGACCAACAACCCACGAGTTTAGGATATGGAATGACATCAAAAGATATGTCTCCGACTT 479
Query 481 TGCTCCATCAAGTTGCTCTGTTGTTCTAGTAGGAAATCAAAGAAAACCGCATAAAGATTG 540
||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 480 TGCTCCATCAAGTTGCTCTGTTGTTTTAGTCGGAAACCAAAGAAAACCGCATAAAGATTG 539
Query 541 TTACTCTGACTCCGCGATTTCTCGAGACATAAAGAGTGAGAAGTATTCACCGCGCAGTGT 600
||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||||
Sbjct 540 TTACTCTGACTCCGCGATTTCTCTAGACATAAATAGTGAGAAGTATTCACCACGTAGTGT 599
Query 601 ACTAAACGCTTTATCAAGAGATTCACTTAGCTCTTCGGGAGATGATGCTTCAAGCTTCAA 660
||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 600 ACTAAACACTTTATCAAGAGATTCACTTAGCTCTTCAGGCGATGATGCTTCAAGCTTCAA 659
Query 661 TGGTTCAATGGCCTCTTCTAGCTTCGCTTCGCCTTCAGGGAAACCAAAACATAAGCCAAT 720
||||||||||| |||||||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 660 TGGTTCAATGGTCTCTTCTAGCTTCGCTTCGCCTTCAGACAAACCGAAGCATAAGTCAAT 719
Query 721 GTCTCCATACAGATTCATATCTTCTCTTATCATGAACTCTCCTCTGAGGAAATGGAGAGG 780
||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 CTCTCCTTACAAATTCATATCTTCTCTTATCATGAATTCTCCTCTGAGGAAATGGAGAGG 779
Query 781 AAGCGAGACTAAGAGCAAGCTTAAACCTCAACCTTTAATTCAATGCTTCACTTACAACGA 840
||| |||||||||| ||||| |||||||| ||| |||||||||||||||||||||||||
Sbjct 780 AAGTGAGACTAAGAACAAGCCCAAACCTCAGCCTCTAATTCAATGCTTCACTTACAACGA 839
Query 841 GATTTCAAAGGCCACGAATGGTTTTGATCAAGAGAACATTGTAGGCATAGGAGGCTACTC 900
||||||||||||||| |||| |||| | |||| ||| || ||||||||||||||||||||
Sbjct 840 GATTTCAAAGGCCACAAATGATTTTCACCAAGGGAATATAGTAGGCATAGGAGGCTACTC 899
Query 901 TGAAGTGTACAGAGGAGATTTATGGGATGGAAGAAGAATCGCAGTGAAGAGACTAGCCAA 960
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 900 TGAAGTGTACAGAGGAGATTTATGGGATGGAAGAAGAATAGCAGTGAAGAGATTAGCCAA 959
Query 961 GGAGAGTGGTGACATGAACAAGGAGAAAGAGTTTCTTACAGAACTCGGCATCATTAGTCA 1020
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 960 GGAGAGTGGTGACATGAACAAGGAGAAAGAGTTTCTTACGGAACTTGGCATCATAAGTCA 1019
Query 1021 TGTCTCTCATCCCAACACTGCTCTTCTCTTAGGTTGTTGTGTTGAGAGAGGTCTCTATCT 1080
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1020 TGTCTCTCATCCCAACACTGCTCTTCTCTTAGGTTGTTGTGTTGAGAAAGGTCTTTATCT 1079
Query 1081 TGTCTTCAGATTCTCCGAGAATGGAACCTTGTACTCTGCGTTGCACGAGAAGGAGAATGG 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1080 TGTCTTCAGATTCTCCGAGAATGGAACCTTGTACTCTGCGCTGCACGAGAATGAGAATGG 1139
Query 1141 GTCGTTAGATTGGCCTATACGATACAAAATTGCGGTTGGAGTTGCTCGAGGGCTTCACTA 1200
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 GTCGTTAGATTGGCCTGTACGGTACAAAATTGCGGTTGGAGTTGCTCGAGGGCTTCATTA 1199
Query 1201 TCTTCACAAACGCTGCAACCACCGGATCATTCACCGCGACATAAAATCTTCCAATGTTTT 1260
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 TCTTCACAAACGCTGCAACCACCGGATCATTCACCGCGACATTAAATCTTCCAATGTTTT 1259
Query 1261 ACTTGGACCTGATTATGAACCGCAGATAACTGATTTTGGATTGGCGAAATGGTTGCCTAA 1320
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 ACTTGGACCTGATTACGAACCGCAGATAACTGATTTTGGATTGGCCAAATGGTTGCCTAA 1319
Query 1321 CAAATGGACTCACCATGCGGTTATACCAGTTGAAGGAACGTTTGGTTATCTAGCACCAGA 1380
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1320 CAAATGGACTCACCATGCGGTTATACCGGTTGAAGGAACGTTTGGTTATCTAGCTCCAGA 1379
Query 1381 GTCCTTAATGCAAGGAAC-AGTCGACGAGAAAACCGACATCTACGCATTCGGTATTCTCC 1439
|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||
Sbjct 1380 GTCCTTAATGCAAGGAACCA-TCGACGAGAAAACCGACATCTACGCATTCGGCATTCTCC 1438
Query 1440 TAT-TAGAGATCATAACTGGACGAAGACCGGTTAATCCCACTCAGAAACACATTCTCTTA 1498
| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1439 T-TCTAGAGATCATAACTGGTCGAAGACCGGTTAATCCCACTCAGAAACACATTCTCTTA 1497
Query 1499 TGGGCAAAGCCGGCGATGGAGACAGGTAACACAAGAGAGTTGGTTGATTCGAAATTGCAA 1558
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1498 TGGGCAAAGCCGGCGATGGAGACAGGTAACACAAGTGAGTTGGTTGATCCGAAATTGCAA 1557
Query 1559 GATAAGTATGACGATCAACAGATGAACAGGCTTA-TCCTTACAGCTTCACATTGTGTTCA 1617
|||||||| ||||| ||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 1558 GATAAGTACGACGACCAACAGATGAACAAGCT-AGTCCTTACAGCTTCACATTGTGTTCA 1616
Query 1618 ACAATCACCCATATTACGACCAACCATGACTCAGGTACTGGAGTTGCTCACAAATGGGAA 1677
|||||| || ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1617 ACAATCTCCGATATTACGACCAACCATGACTCAGGTATTGGAGTTGCTTACAAATGGGAA 1676
Query 1678 CGAGGCTGAGATTGCAAAGAGCTGGAGAATGCCTAAGGATATGACTAATGACCATGATGA 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1677 CGAGGCTGAGATTGCAAAGAGCTGGAGAATGCCTAAGGATATGACTAATGAC---GATGA 1733
Query 1738 TATTTTGATAATAATGGATGGGATGACTATTCTATGATTTTCGGATACGATGTTCCTTCG 1797
| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1734 T-----GATAATAATGAATGGGATGATTATTCTATGATTTTCGGATATGATGTTCCTTCA 1788
Query 1798 GATTCTTCtttttgatatttttgttt 1823
||||||||||||| ||||||||||||
Sbjct 1789 GATTCTTCTTTTTAATATTTTTGTTT 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94326824055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5