BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495865
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57685.1 | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper 3 ... 1061 0.0
> AT5G57685.1 | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper
3 | chr5:23366004-23366867 REVERSE LENGTH=864
Length=864
Score = 1061 bits (574), Expect = 0.0
Identities = 770/856 (90%), Gaps = 47/856 (5%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaacacaaaactcaaaaccatcttttttgaaaaaaaTATGGAAGGAAGACA 60
||||||||||||| ||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 21 AAAAAAAAAAAACTCAAAACTCAAAACCATC-TTTGTGAAAAAAAAATGGAAGGAAGACA 79
Query 61 ATATTACCCTCCGAGAGAAAACGTCGACGGAAACAGAACCGCCAT--G-GGAGGACCTCA 117
|||||||||||||||||||||||| || |||||||||||| |||| | |||||||||||
Sbjct 80 ATATTACCCTCCGAGAGAAAACGTTGAAGGAAACAGAACCACCATGGGAGGAGGACCTCA 139
Query 118 CTCGCCGTGGCATTCACCGGTTCCTTATCTTTTTGGTGGTTTAGCGGCGATGCTTGGTCT 177
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 140 CTCACCGTGGCATTCACCGGTTCCTTATCTCTTTGGTGGTTTAGCAGCGATGCTTGGTCT 199
Query 178 CATAGCTTTTGCTCTTCTAATCCTCGCTTGCTCGTACTGGCGTCTCTCCGGTTATCTAGA 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 200 CATAGCTTTTGCTCTTCTAATCCTCGCTTGCTCTTACTGGCGTCTCTCCGGTTATCTAGA 259
Query 238 CGGCGAGGAAAACCAGAGCAGAGAGAGAGATCTTGAAGCCGGAGACGTCAAAACTGA-AA 296
|||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| ||
Sbjct 260 CGGCGAGGAAAACCAGAGCAGAGAGAGAGATCTTGAAGTCGGAGATGTGAAACCTGACAA 319
Query 297 AAGCAGCGGTGAAGCCTGTTGCTTTGCCGGAGAAGTTCTTGGTGATTATGGCCGGAAATG 356
|| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AA-CGGCGGTGAAGCCTGTAGCTTTGCCGGAGAAGTTCTTGGTGATTATGGCCGGAAATG 378
Query 357 TCAAACCTACTTACTTAGCAACGCCGGCGGTAAAAACGTGTACTTGTGACGATGATGACG 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 379 TCAAACCTACTTACTTAGCAACGCCGTCGGTAAAAACGTGTACTTGTGACGATGATGACG 438
Query 417 ATGGAGATGATGATGACGTGGAGGGTAA-TGATCAGGTGGTGCGGCGGAGTATTGAAAGT 475
||| | | ||||||||||||||||| || |||||||||||||| |||||||| |||||||
Sbjct 439 ATG-A-A-GATGATGACGTGGAGGG-AAGTGATCAGGTGGTGCCGCGGAGTAGTGAAAGT 494
Query 476 AACGGTGAGACACATTGACAAAACCAGAGGAAAGGAAGAGAAAAACAGTGGATCGTCT-A 534
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 495 AACGGTGAGACACATTGACAAAACCAGAGGAAGGGAAGAGAAAAACAGAGGATCGTCTTA 554
Query 535 TTTGTGAACAGTTTTGAAGAATTGTTTGCAGCTTCTGACCCGGTTGCGTCGGGTATTCGG 594
|| |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 555 TT-GTGAACAGTTCTGAAGAACTGTTTGCAGCATCTGACCCGGTTGCGTCGGGTATTCGG 613
Query 595 GTCGGGTCAGAACTCTACTTGATGTTGAGACTTAATAATCCTACGGTGGTGGAAAATTTG 654
|| || ||| |||||||||||||| |||| | |||| | | || |||||| |
Sbjct 614 GTTGGATCATAACTCTACTTGATGATGAG--T-AATA-T--T--GGAA----AAAATT-G 660
Query 655 GAATTGGGATTGGATTATTAGGAGGTGCTT-TGATCAATGATGTATTTAAAA--TCTCAG 711
|||||||||||| ||||||||||| || || ||||||||||||||||||||| ||| ||
Sbjct 661 GAATTGGGATTGAATTATTAGGAGTTG-TTCTGATCAATGATGTATTTAAAAAATCTTAG 719
Query 712 CTTTTGCCtttt---t--tt--tt--tttAGTT-------GTAAGTTATGTTCCATATCT 755
|||||||||||| | || || ||| || ||||||| ||| ||||||||
Sbjct 720 CTTTTGCCTTTTGCATCGTTAATTCGTTTTTTTTTTTTTTGTAAGTTTTGTGCCATATCT 779
Query 756 AGGTCATGATGAGGGaaaaaaaTGTAAATTTCTGAGACTTTGAATGGGAAATTTGTGATT 815
|||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 780 AGGTCATGATGAGGGATAAAA-TGTAAATTTCTGAGACTTTGAATGTGAAATTTGTGATT 838
Query 816 TATGGAATTGAGAATG 831
||||||||||||||||
Sbjct 839 TATGGAATTGAGAATG 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5