BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495865 Length=831 Score E Sequences producing significant alignments: (Bits) Value AT5G57685.1 | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper 3 ... 1061 0.0 > AT5G57685.1 | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper 3 | chr5:23366004-23366867 REVERSE LENGTH=864 Length=864 Score = 1061 bits (574), Expect = 0.0 Identities = 770/856 (90%), Gaps = 47/856 (5%) Strand=Plus/Plus Query 1 aaaaaaaaaaaacacaaaactcaaaaccatcttttttgaaaaaaaTATGGAAGGAAGACA 60 ||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||| Sbjct 21 AAAAAAAAAAAACTCAAAACTCAAAACCATC-TTTGTGAAAAAAAAATGGAAGGAAGACA 79 Query 61 ATATTACCCTCCGAGAGAAAACGTCGACGGAAACAGAACCGCCAT--G-GGAGGACCTCA 117 |||||||||||||||||||||||| || |||||||||||| |||| | ||||||||||| Sbjct 80 ATATTACCCTCCGAGAGAAAACGTTGAAGGAAACAGAACCACCATGGGAGGAGGACCTCA 139 Query 118 CTCGCCGTGGCATTCACCGGTTCCTTATCTTTTTGGTGGTTTAGCGGCGATGCTTGGTCT 177 ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 140 CTCACCGTGGCATTCACCGGTTCCTTATCTCTTTGGTGGTTTAGCAGCGATGCTTGGTCT 199 Query 178 CATAGCTTTTGCTCTTCTAATCCTCGCTTGCTCGTACTGGCGTCTCTCCGGTTATCTAGA 237 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 200 CATAGCTTTTGCTCTTCTAATCCTCGCTTGCTCTTACTGGCGTCTCTCCGGTTATCTAGA 259 Query 238 CGGCGAGGAAAACCAGAGCAGAGAGAGAGATCTTGAAGCCGGAGACGTCAAAACTGA-AA 296 |||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| || Sbjct 260 CGGCGAGGAAAACCAGAGCAGAGAGAGAGATCTTGAAGTCGGAGATGTGAAACCTGACAA 319 Query 297 AAGCAGCGGTGAAGCCTGTTGCTTTGCCGGAGAAGTTCTTGGTGATTATGGCCGGAAATG 356 || | |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 320 AA-CGGCGGTGAAGCCTGTAGCTTTGCCGGAGAAGTTCTTGGTGATTATGGCCGGAAATG 378 Query 357 TCAAACCTACTTACTTAGCAACGCCGGCGGTAAAAACGTGTACTTGTGACGATGATGACG 416 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 379 TCAAACCTACTTACTTAGCAACGCCGTCGGTAAAAACGTGTACTTGTGACGATGATGACG 438 Query 417 ATGGAGATGATGATGACGTGGAGGGTAA-TGATCAGGTGGTGCGGCGGAGTATTGAAAGT 475 ||| | | ||||||||||||||||| || |||||||||||||| |||||||| ||||||| Sbjct 439 ATG-A-A-GATGATGACGTGGAGGG-AAGTGATCAGGTGGTGCCGCGGAGTAGTGAAAGT 494 Query 476 AACGGTGAGACACATTGACAAAACCAGAGGAAAGGAAGAGAAAAACAGTGGATCGTCT-A 534 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | Sbjct 495 AACGGTGAGACACATTGACAAAACCAGAGGAAGGGAAGAGAAAAACAGAGGATCGTCTTA 554 Query 535 TTTGTGAACAGTTTTGAAGAATTGTTTGCAGCTTCTGACCCGGTTGCGTCGGGTATTCGG 594 || |||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 555 TT-GTGAACAGTTCTGAAGAACTGTTTGCAGCATCTGACCCGGTTGCGTCGGGTATTCGG 613 Query 595 GTCGGGTCAGAACTCTACTTGATGTTGAGACTTAATAATCCTACGGTGGTGGAAAATTTG 654 || || ||| |||||||||||||| |||| | |||| | | || |||||| | Sbjct 614 GTTGGATCATAACTCTACTTGATGATGAG--T-AATA-T--T--GGAA----AAAATT-G 660 Query 655 GAATTGGGATTGGATTATTAGGAGGTGCTT-TGATCAATGATGTATTTAAAA--TCTCAG 711 |||||||||||| ||||||||||| || || ||||||||||||||||||||| ||| || Sbjct 661 GAATTGGGATTGAATTATTAGGAGTTG-TTCTGATCAATGATGTATTTAAAAAATCTTAG 719 Query 712 CTTTTGCCtttt---t--tt--tt--tttAGTT-------GTAAGTTATGTTCCATATCT 755 |||||||||||| | || || ||| || ||||||| ||| |||||||| Sbjct 720 CTTTTGCCTTTTGCATCGTTAATTCGTTTTTTTTTTTTTTGTAAGTTTTGTGCCATATCT 779 Query 756 AGGTCATGATGAGGGaaaaaaaTGTAAATTTCTGAGACTTTGAATGGGAAATTTGTGATT 815 |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| Sbjct 780 AGGTCATGATGAGGGATAAAA-TGTAAATTTCTGAGACTTTGAATGTGAAATTTGTGATT 838 Query 816 TATGGAATTGAGAATG 831 |||||||||||||||| Sbjct 839 TATGGAATTGAGAATG 854 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40488722482 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5