BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495867
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57700.3 | Symbols: | BNR/Asp-box repeat family protein | c... 1821 0.0
> AT5G57700.3 | Symbols: | BNR/Asp-box repeat family protein |
chr5:23375242-23377142 FORWARD LENGTH=1291
Length=1291
Score = 1821 bits (986), Expect = 0.0
Identities = 1107/1166 (95%), Gaps = 6/1166 (1%)
Strand=Plus/Plus
Query 113 ATGTCAGAAACAG-ATTTCAAAGTGTTGCTTGAGACATTCACATTCCCTGCTGATTCAGC 171
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 49 ATGTCAGAAACAGAATTT-AAAGTGTTGCTTGAGACATTCACATTTCCTGCTGATTCTGC 107
Query 172 TCCCTTCAAGAGTTGTCATGCCTCTACCATAGTTGAGGTTGTTGAAGATCATTTTC-TGA 230
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 108 TCCCTTCAAGAGTTGTCATGCCTCTACCATAGTTGAGGTTGTTAAAGATCA-TTTCTTGG 166
Query 231 CTGCGTATTTCGGAGGCACCACGGAAGGAGCACCTGATGTCAAAATCTGGTTGCAGCATT 290
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 167 CTGCGTATTTCGGAGGCACCAGGGAAGGAGCACCTGATGTCAAAATCTGGTTGCAGCATT 226
Query 291 TCAAGGATGGTCAATGGGATTCACCGGTTATTGTTGATGAAGAGCCAGGAGTTCCAATGT 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TCAAGGATGGTCAATGGGATTCACCGGTTATTGTTGATGAAGAGCCAGGAGTTCCAATGT 286
Query 351 GGAACCCTGTCTTGTTCAAACTTCCTTCTCAAGAGCTCTTATTGTTCTACAAAATCGGCC 410
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 287 ATAACCCTGTCTTGTTCAAACTTCCATCTCATGAGCTCTTATTGTTCTACAAAATCGGCC 346
Query 411 AGGAGGTTCAAAAATGGAGTGGTTGCATGAAACGATCATATGATAAAGGTAGAACTTGGA 470
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 347 AGGAGGTTCAAAAATGGAGTGGTTGCATGAAACGATCATATGATAAAGGTATAACTTGGA 406
Query 471 CTGAAAGAGAACAGCTTCCTCCAGGGATTCTCGGTCCCATCAAAAACAAGCCTATATTGC 530
|||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||
Sbjct 407 CTGAAAGAGAACAGCTTCCTCCTGGGATTCTCGGTCCTATCAAAAACAAGCCCATTTTGC 466
Query 531 TTGAAGATGGTACACTCCTTTGCGGATCATCTGTTGAAAGTTGGAATTCTTGGGGAGCGT 590
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 467 TTGAAGACGGTACTCTCCTTTGCGGATCATCTGTTGAGAGTTGGAATTCTTGGGGAGCAT 526
Query 591 GGATGGAGGTCACTTCAGACGCGGGTAGATCATGGAGAAAGCAAGGGCCAATATACATTC 650
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 527 GGATGGAGGTCACTTCAGATGCGGGTAGAACATGGAGAAAGAAAGGGCCAATATACATTC 586
Query 651 AAGGCAAGAGTCTTAGCGTGATCCAACCGGTTCCATACCAAACCGCAACTGGGAAATTAC 710
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 587 AAGGCAAGAGTCTTAGCGTGATCCAACCAGTTCCATACCAAACCGCAGCTGGGAACTTAC 646
Query 711 GGGTTTTACTCAGATCCTTTACCGGCATTGATAGAATCTGTATCTCAGAATCTTCTA-AT 769
|| ||||||||||||||||||| |||||||| ||||||||||||||||| |||| | ||
Sbjct 647 GGATTTTACTCAGATCCTTTACTGGCATTGACAGAATCTGTATCTCAGAGTCTT-TGGAT 705
Query 770 GGCGGTGAGAACTGGAGTTTTGCAGTACCAACAGTTCTCCCAAACCCAAATTCAGGTATC 829
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 706 GGCGGTGAGAACTGGAGTTTTGCAGTACCAACGGTTCTCCCAAACCCAAATTCAGGTATT 765
Query 830 GATGGAGTCAAGCTAAAGGATGGTAGGGTAGTGCTTGCTTACAACACAGACTCAAGAGGT 889
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 766 GATGGAGTCAAGCTTAAGGATGGTAGGCTAGTGCTTGCTTACAACACAGACTCAAGAGGT 825
Query 890 GTGCTCAAAGTAGGAGTTTCTTTAGACGACGGTGATTCATGGACCGATGTTTTAACATTG 949
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 826 GTGCTCAAATTAGGAGTTTCTTTAGACGACGGTGATTCATGGACCGATATTTTAACGTTG 885
Query 950 GAGGAATCTCCGGGAATGGAATTTTCGTACCCGGCGGTTATACAAGCCGGAGACGGGAAT 1009
|||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||
Sbjct 886 GAGGAATCTCCGGGAATGGAGTATTCGTACCCGGCTGTTATACAAGCCGGAGACGGCAAT 945
Query 1010 GTCCACGTCACCTATACTTATAACAGGACACAAATTAAGCATGTTGTGCTCAAGACTGCG 1069
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 946 GTCCACGTCACCTATACATATAACAGGACACAAATTAAGCATGTGGTGCTCAAGACTGCG 1005
Query 1070 ACAGATATCGATTCAAAGCCATACCGACATCGTGAAGCAGAAGGAGGACACGTGAACTTG 1129
|||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1006 ACAGATATCGATTCGAAGCCATACCGACATGGTGAAGCAGGAGGAGGACACGTGAACTTG 1065
Query 1130 GGTTTGTACGAACCAAACATTGATTAATTAGCTATTTGTCTCTTGAACCATTGATATGGA 1189
| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 1066 GATTTGTACGAACCAAACATTAATTAATTAGCTATTTGTCTCTTGAACCATCGATGTGGA 1125
Query 1190 GTGTGACTTTCTTCTTACGGAAGAACAAAGAATTTTCTCTTTCTTGTCTTGTAAGTTATG 1249
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1126 GTGTGACTTCCTTCTTACGGAAGAACAAAGAATGTTCTCTTTCTTGTCTTGTAAGTTATT 1185
Query 1250 GATTGATCCATTCTTGAGTTTGTAAA 1275
|||||||| |||||||||||||||||
Sbjct 1186 GATTGATCGATTCTTGAGTTTGTAAA 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5