BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495875
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57790.1 | Symbols: | unknown protein; Has 13 Blast hits to... 726 0.0
> AT5G57790.1 | Symbols: | unknown protein; Has 13 Blast hits
to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:23412025-23413627 REVERSE
LENGTH=1407
Length=1407
Score = 726 bits (393), Expect = 0.0
Identities = 542/612 (89%), Gaps = 17/612 (3%)
Strand=Plus/Plus
Query 102 TCGTTCTGTCGAAGCACAAGAGATTGAATAACACATGGAAGGAACAAAGAGAAGTTCTTT 161
||||| |||||||||||||||| ||||| | |||||||||| |||||||||||||||||
Sbjct 153 TCGTTTTGTCGAAGCACAAGAGGCTGAATCA-ACATGGAAGGCACAAAGAGAAGTTCTTT 211
Query 162 GGGTGCGCGAAAGAAACTCAAGAGGAAGAAGAAGAACAGTAGACTTATGAGAAGTAGTGT 221
|||||||||||||||||| |||||||||||| | ||| |||||| | ||||| | |||
Sbjct 212 GGGTGCGCGAAAGAAACTAAAGAGGAAGAAGT-G--CAGAAGACTTGTCAGAAGCATTGT 268
Query 222 TACCTACCTCAAATCTGATGCATACTTGTTCGCTCCTCTGTTTTCCAACTTTCCTCCGCT 281
|||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||
Sbjct 269 CACCTACCTCAAATCTGATACATACTTGTTTGCTCCTCTGTTTTCCAATTTTCCACCGCT 328
Query 282 CACGACGGAGATAAACACGCCTCCGCCGTCGAATTCCAAACCATCGAC-GCTGGACGACA 340
||||||||||||| | ||||||||||||||||||||||||||||| || | ||||||| |
Sbjct 329 CACGACGGAGATAGATACGCCTCCGCCGTCGAATTCCAAACCATCCACTG-TGGACGATA 387
Query 341 TCTCCATGGCAGGGTTTGAGTCATTGGGGATTGAGAGGGTTCTTAAGAAGAAGAGAAGAA 400
||||||||| |||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 388 TCTCCATGGAAGGGTTTGAGTCATTGGGGATTGAGAAG---CTTATCAAGAAGAGAAGAA 444
Query 401 TGTCTGAGAAAGTTAAGGAATATCTAAAATCTGATTGTTTTATGTACGCACCAATGATAT 460
||||||||||||| ||||||||||| |||||||| |||| ||||||| |||| ||||| |
Sbjct 445 TGTCTGAGAAAGTGAAGGAATATCTCAAATCTGACTGTTATATGTACTCACCGATGATCT 504
Query 461 CGTCCCCTCCAAAGCTTGGTTCTTCGGTTAAAGGGAATATGCAGATTACGATGGAAGTAT 520
| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 505 CCTCGCCTCCAAAACTTGGTTCTTCGGTTAAAGGGAAAATGCAGATTACGATGGAAGTAT 564
Query 521 CAACG--G--G--TACTACAACCATGAAGGAAGATAACAACAACTATAGGAATCGCCGGT 574
| ||| | | |||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 565 CGACGAAGTTGAGTACTACAACCATGAAGGAAGATGACAGTGGCTATAGGAATCTCCGGT 624
Query 575 CAGATATTGTAGAACAGACATTGCATA-GCGGAAGGATCAACTCTCCAAAACGAGCACAG 633
||||||||| ||||||||||||||||| | || ||||||||||||||||||| ||||| |
Sbjct 625 CAGATATTGCAGAACAGACATTGCATAAG-GGTAGGATCAACTCTCCAAAACCAGCACTG 683
Query 634 GTTATCTTAGAAGGACAACGAACTGGACTTAGCCGTGAAACCGATGTTTCACCAGCCTTA 693
|| ||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||
Sbjct 684 GTCATCTTAGAAGGACAACGAACTGGACTTGGCCGTGAAACTGATCTTTCACCAGCTTTT 743
Query 694 TCTTCTCCAACA 705
||||||||||||
Sbjct 744 TCTTCTCCAACA 755
Score = 169 bits (91), Expect = 5e-41
Identities = 107/115 (93%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 711 TATGTGACAGGGGAAAAGATGGTGAAGCCAGATCAAAGAAGAGTTGCAATTGAGTGAAGA 770
||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1183 TATATGACAGGGGAAAAGATGGTGAAGCCAGATCAAAGGAGAGTTACAATTGAGTGAAGA 1242
Query 771 TAGTAATGTAGACATAGTAGACACAATGTAATCATTGTAAAATACAAATTAATTA 825
||||||| | ||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 1243 TAGTAATCTCGACTTAATAGACACAATGTAATCATTGTAAAATACAAATTAGTTA 1297
Score = 100 bits (54), Expect = 2e-20
Identities = 71/79 (90%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 28 GTGTGAGACCATGGCGACGCGTGTGACCAGACGGCGTTTAAACCCTTCCT-CCAAAATCT 86
||| ||||| |||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 47 GTGAGAGACAATGGTGACGCGTGTGACCAGACGGCGTTTAAACCCTTT-TACCAAAATCT 105
Query 87 CGTCTTTCTTCTTCTTCGT 105
| ||||||||||||| |||
Sbjct 106 CATCTTTCTTCTTCTCCGT 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5