BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495877
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57810.1 | Symbols: TET15 | tetraspanin15 | chr5:23424270-23... 1777 0.0
> AT5G57810.1 | Symbols: TET15 | tetraspanin15 | chr5:23424270-23425647
REVERSE LENGTH=1208
Length=1208
Score = 1777 bits (962), Expect = 0.0
Identities = 1131/1209 (94%), Gaps = 25/1209 (2%)
Strand=Plus/Plus
Query 1 TCCTCATATCAACTCAACACCTCCAT------AGAGAGCTTTCTTTCACTTTCATATGGC 54
||| |||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 4 TCCCCATATCAACTCAACACCTCCATAGAGAGAGAGAGCTTTCTTTCACTTTCACATGGC 63
Query 55 TGATAATGCCCAAGTAGTACCCGTCGAGGAACCAGCCGCAACCGCCACAG---C--C-AC 108
||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 64 TGATAATGCTCAAGTAGTACCCGTCGAGGAACCAGCCGCAACCGCCACAGCCACAGCTAC 123
Query 109 AGCAACCACAACGACTGAGCCAGAAGCCAATAGTTCAGACAAAATGGAGTCACAGAGTGA 168
||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 124 AGCAACCGCAACGACTGAGCCAGAAGCCAAGAGTTCAGACCAAATGGAGTCACAAAGTGA 183
Query 169 TAATAAGCCACCGGTTGGAACATTGGTGGCACTTGTGAACATTTTAGCCGCCGGTGTCCT 228
||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 184 TAATAAGCCACCGATGGGAACATTGATGGCACTTGTGAACATTTTAGCCGCTGGTGTCCT 243
Query 229 TCCAATCTTCACTTTCGTCCTCTCACTTACACTCCTCGGCTACGCAGTGTGGCTCCTTTA 288
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 244 TCCGATCTTCACTTTCGTCCTCTCACTTACACTCCTCGGCTACGCAGTGTGGCTTCTTTA 303
Query 289 CATGCGTAGCTACGACTGCGAAGATATTCTCGGTCTGCCACGTGTCCAGACGCTAGCTAG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CATGCGTAGCTACGACTGCGAAGATATTCTCGGTCTGCCACGTGTCCAGACGCTAGCTAG 363
Query 349 CGTCGGTCTTCTCGCGGTGTTCGTTGTCAGCAACGCTGCTCTGTTTTTGCGGCGGAAGTT 408
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 364 TGTCGGTCTTCTCGCGGTGTTTGTTGTCAGCAACGCAGCTCTGTTTTTGCGGCGGAAGTT 423
Query 409 TCCGATGCCTGCACTCGTGGTGATGGTGGTGATCTTGTTGCTAATGCTTTTCATCGGTTT 468
||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 424 TCCGATGCCTGCACTTGTGGTGATGGTGGTGGTCTTGTTGTTAATGCTTTTCATCGGTTT 483
Query 469 GGCGTATGCCGGAGTAAATGAGATGCAGAGCCGGCGGTTTCCGGCGACTAGGATGTGGTT 528
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 484 GGCGTATGCCGGAGTAAATGAGATGCAAAGCCGGCGGTTTCCGGCGACAAGGATGTGGTT 543
Query 529 CAAGCTCAAAATCATGGACG---ATGTGAATTGGAACAATATCAAATCATGTATCTATGA 585
|||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||
Sbjct 544 CAAGCTCAAAATCATGGACGATCATGTGACCTGGAACAATATCAAATCGTGTGTCTATGA 603
Query 586 TAAAGGAGCTTGCAACGACCTCATTTATGAATCTCCAAATGAAAAACCTTACAATAGAAG 645
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 604 TAAAGGAGCTTGCAACGACCTCATTTACGGATCTCCAAATGAAAAACCTTACAATAGAAG 663
Query 646 AAATATGCCACCAATCAAGAATGGATGTTGTATGCCACCAGAGACATGTAACATGGATGC 705
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 664 AAAAATGCCACCAATCAAGAATGGATGTTGTATGCCACCAGAGACATGTAACATGGACGC 723
Query 706 GATAAACGCAACGTTTTGGTATAGAAGAAAAGACGAAGGACCACCGTCATCTATGACCCT 765
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||
Sbjct 724 GATAAACGCGACGTTTTGGTACAGAAGAAAAGACGAAGGACCACCGTCGTCTATGAACCT 783
Query 766 AATGTATGGTGATGAGATGATGGTGGGAAGGATAAGCGACTGTCAACTATGGAGGAATGA 825
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 784 AATGTACGGTGATGAGATGATGGTGGGAAGGATTAGCGACTGTCAACTATGGAGGAACGA 843
Query 826 TTGGAGCATTTTGTGCTATGATTGTAGATCTTGCAAATTCGGATTCGTAAGATCGGTAAG 885
|||||||||||| |||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 844 TTGGAGCATTTTATGCTATGATTGTAGATCTTGTAAGTTCGGATTCATAAGATCGGTAAG 903
Query 886 GAGGAAATGGTGGCAGCTTGGTATCTTTTTGATCGTCATTTCCAttcttcttctcatctc 945
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 904 GAGGAAATGGTGGCAGCTCGGTATCTTCTTGATCGTCATTTCCATTCTTCTTCTCATGTC 963
Query 946 tcatctcttgatcttcttGGCCACTTTTTGGGAACGATTCAATGGTTAGTCAGATCATGA 1005
||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||
Sbjct 964 TCATCTCTTGATCTTCTTGGCTACTTTTTGGGAACGATTCAAGGGTTAGTCACATTATG- 1022
Query 1006 GGGTCTCTTTTCTAATTAGGTAAAATAATCTCTTTCTTCTGCATTTGTTTTAGAACCTTA 1065
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1023 GAGTCT-TTT-CTAATTAGGTAAAATAATCTCTTTCTTCTGCATTTGTTTTAGAAC-TCA 1079
Query 1066 AGCAGATGTTTCTTTGAGCAAATTAAAGTTTAGCTCTTCATCCTCTGTCTCTTTTGTTAT 1125
||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1080 AGCAGATGTCTCTTTGAGCAAAT----GTTTAGCTCTTCTTCCTCTGTCTCTTTTGTTAT 1135
Query 1126 TGTGGGATTTTGGTTGGTTTAATGTAGAGAATGTGTTTGTAATAAAGTATAAACAATTG- 1184
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1136 TGTGGGATTTTTGTTGGTTTAGTGTAGAGAATGTGTTTGTAATAAAGTATAAACAATTGG 1195
Query 1185 TTTGGATTC 1193
|||| ||||
Sbjct 1196 TTTG-ATTC 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5