BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495879
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57830.1 | Symbols: | Protein of unknown function, DUF593 |... 2146 0.0
AT5G57820.1 | Symbols: | zinc ion binding | chr5:23428601-2342... 80.5 4e-14
> AT5G57830.1 | Symbols: | Protein of unknown function, DUF593
| chr5:23429291-23430996 REVERSE LENGTH=1415
Length=1415
Score = 2146 bits (1162), Expect = 0.0
Identities = 1284/1342 (96%), Gaps = 11/1342 (1%)
Strand=Plus/Plus
Query 1 CTAATCATAAAACAAATCACACATTGATCAAAGATCAACCAAAA-CAAGGAAA-TTTTGA 58
||||||||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 72 CTAATCATAGAACAAATCACACATTGATCAAAGATCAACCAAAAGCAA-GAAATTTTTGA 130
Query 59 TC-AAAATGGTGGAGAGAACGATGAGTTTGGGGGTAGGAGGCAATGGAGAAACCTCAGGA 117
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 131 TCTAAAATGGTGGAGAGAACGATGAGTTTGGGGGTAGGAGGAAATGGAGAAACCTCAGGA 190
Query 118 GTCAGAGAAACGATGTGGGCACAACAAGAGCTTCTTCAAAAGATCAACCAAGAACTTGAC 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 191 GTCAGAGAAACGATGTGGGCACAACAAGAGCTTCTTCAAAAGATCAATCAAGAACTTGAC 250
Query 178 GCAGAACGTGAAGCTTCTTCCTCTGCTGCAAGCGAGGCCTTATCGATGATTCTACGGCTT 237
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 251 GCAGAACGTGAAGCTTCTTCATCTGCTGCAAGCGAGGCTTTATCGATGATTCTACGGCTT 310
Query 238 CAAGGTGAGAAAGCAGCGTTGGAGATGGAAGCTAGTCAGTACAAAAGAATGGCGGAGGAG 297
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 311 CAAGGTGAGAAAGCTGCGTTGGAGATGGAAGCTAGTCAGTACAAGAGAATGGCGGAGGAG 370
Query 298 AAGATGTGTCATGCCGAGACCTCTCTTGCGCTTTTCGAAGATCTGATTTATCAGAAGGAA 357
|| ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 371 AAAATGTGTCATGCTGAGACATCTCTTGTGCTTTTCGAAGATCTGATTTATCAGAAGGAA 430
Query 358 ATGGAGATTGCGTCTCTTGAGTTTCAGGTTCAGGCTTATAGATGTAAATTACTCAGCCTC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ATGGAGATTGCGTCTCTTGAGTTTCAGGTTCAGGCTTATAGATGTAAATTACTCAGCCTT 490
Query 418 GGTTGCTCTGATCCGGCTGTGATTGAGAATAAGTTCCCGGAAAATCTCATCTTTTACGGC 477
|||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 491 GGTTGCTCTGATCCTGCTGTGATTGAGAATAAGTTCCCTGAAACTCTCATCTTTTCCGGT 550
Query 478 GAAAACTCTCGTGGGAATCAAAAGAGCAAGATGAAGAGAAATCTATCGAGCCCATTTGAT 537
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 551 GAAAACTCTCGTGGCAATCAAAAGAGGAAGATGAAGAGAAATCTTTCGAGTCCATTTGAT 610
Query 538 GGCATATCTAGTGAAAGAAGTTTACTTTTGTCTGATGTTAATGGTGAAAGCTTTGAGGAG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GGCATATCTAGTGAAAGAAGTTTACTTTTGTCTGATGTTAATGGTGAAAGCTTTGAGGAG 670
Query 598 AAGAAAGGTCTTGT--TGAG-AGTTCTGTATCTCCTCGTGAAGACTTGAATGCTTATTGG 654
|||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 671 AAGAAAGGTCTTGTAGAGAGTAGTTCTGTATCTCCTCGTGAAGACTTGAATGCGTATTGG 730
Query 655 GAACAGATTAGGAGAATAGATGAGCATGTTCGAGAGATTTCAGACTCAAGAGATGCTCAG 714
|||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 731 GAACAGATTAGGAGAATAGATGAGCATGTTAGAGAGATTTCAGACTCTAGAGATACTCAG 790
Query 715 AAGGTATCTAAATTCCCTTTGCTTAGGCGTGAGTCAATGTCACATGCGTTGGTGTCACAA 774
|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 791 AAGGCATCTAAATTCCCTTTGATTAGGCGTGAGTCAATTTCACATGCGTTGGTGTCACAA 850
Query 775 GTTAGCAATACTATCCTTGAGTCAGCTAAGAGTGATGTCAGTTCGATTATGGAGATGATG 834
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 851 GTTAGCAATACTATACTTGAGTCAGCTAAGAGTGATGTTAGTTCGATTATGGAGATGATG 910
Query 835 AAGAACCCTGATAGATTCTCTGTAAAAGATGCTTCTTTAGAGACTCCGATTCTGTCTCCG 894
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AAGAACCCTGAAAGATTCTCTGTAAAAGATGCTTCTTTAGAGACTCCGATTCTGTCTCCG 970
Query 895 AAAAATGTTCAAGACATCTTCGAGGTTCCTAGGACGAAGGAAAGCCTTACAATCATCTCG 954
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 971 AAGAATGTTCAAGACATCTTCGAGGTTCCTAGGACGAAAGAAAGTCTTACAATCATCTCG 1030
Query 955 GAAGAAGAGGAAGCCGAAGAAAGAAATGCCAGAGGCAAGATGGCGAGTAGTAATTACGAT 1014
|||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 1031 GAAGAAGAGGAAGCCGAAGAAAGAAATGTTAGAGGCAAGATGGTGACTAGTAATTACGAT 1090
Query 1015 AGAAAAGTGAGTAAACCGCCAAGAGATACGAGCATCAAGGGAGAACATTTGAGTTTGCTA 1074
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AGAAAAGTGAGTAAGCCGCCAAGAGATACGAGCATCAAGGGAGAACATTTGAGTTTGCTA 1150
Query 1075 AAGGAGATTCGAGAACAGCTCAATGTAATGCAGTCAGAGATGAGAAGCTTAAGATCAGAA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AAGGAGATTCGAGAACAGCTCAATGTAATGCAGTCAGAGATGAGAAGCTTAAGATCAGAA 1210
Query 1135 CTGCATCA--A-TCTAAACCTGTGTCCAATCCCGAAGAGGATCGAGTCCTTAACTCAATT 1191
|||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1211 CTGCATCATCAATCTAAACCTGTGTCCAATCCCGAAGAGGATCTAGTCCTTAACTCAATT 1270
Query 1192 CAAGAGGCAATGATTCACTTCTGGCTTTAGAAGCTACCATGCGGTGCGGTTCTAGTTTTC 1251
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1271 CAAGAGGCAATGATTCACTTCTGGCTTTAGAAGCTACCATGCGGCGTGGTTCTAGTTTTC 1330
Query 1252 CATATGTAAAGTTACTTAAACCTTTCAAGGATGTAAAAACAAA-TTGATAGATTTCAGAG 1310
||||||||||||||||||||| ||||| ||||||||||| ||| ||||| ||||||||||
Sbjct 1331 CATATGTAAAGTTACTTAAACTTTTCAGGGATGTAAAAAGAAAATTGATTGATTTCAGAG 1390
Query 1311 TAAATCTCTGGTATTTGTAAGT 1332
||||||||||||||||||||||
Sbjct 1391 TAAATCTCTGGTATTTGTAAGT 1412
> AT5G57820.1 | Symbols: | zinc ion binding | chr5:23428601-23429346
FORWARD LENGTH=667
Length=667
Score = 80.5 bits (43), Expect = 4e-14
Identities = 50/53 (94%), Gaps = 1/53 (2%)
Strand=Plus/Minus
Query 1281 GATGTAAAAA-CAAATTGATAGATTTCAGAGTAAATCTCTGGTATTTGTAAGT 1332
|||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 667 GATGTAAAAAGAAAATTGATTGATTTCAGAGTAAATCTCTGGTATTTGTAAGT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65561911770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5