BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495882

Length=680
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57860.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   854    0.0  


> AT5G57860.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr5:23437656-23439311 FORWARD LENGTH=621
Length=621

 Score =  854 bits (462),  Expect = 0.0
 Identities = 522/550 (95%), Gaps = 7/550 (1%)
 Strand=Plus/Plus

Query  134  GGAAGAAGAGTGAATTGTTTCATCCTTGTCTTGCCATGGCCATGTATATTCGTGTGAAGC  193
            ||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||
Sbjct  76   GGAAGAAGAGTGAATTG-TTCATCCTTATCTTGCCATGGCTATGTATATTCGTGTGAAGC  134

Query  194  GCATGAAAACCACTTACTTTATCCAATGTGATCCAACAGAGACTGTTTTGGATGTTAAGC  253
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  GCATGAAAACTACTTACTTTATCCAATGTGATCCAACAGAGACTGTTTTGGATGTTAAGC  194

Query  254  AAAAACTGTTTGCCCTCATTGAGCAACCAGTTACCAATCAGCGTCTGGTCTTAATGTCTA  313
            ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  195  AAAAACTGTTTGCTCTCATTGAGCAACCAGTTAACAATCAGCGTCTGGTCTTAATGTCTA  254

Query  314  CCGAAGAAGTATTAGAGGATTCGAAAACTTTAGCAGATCAGAAGGTTGAGAATGATGCAG  373
            |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct  255  CCGAAGAAGTATTAGAGGATTCGAAATCCTTAGCAGATCAGAAGGTTGAGAATGATGCAG  314

Query  374  TTGTGGCTTTGACTTTGAGGAAAGATGATAACGAGTTTGAGGATGTCAACATTGCACAGC  433
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  315  TTGTGGCTTTGACTTTGAAGAAAGATGATAACGAGTTTGAGGATGTCAACATTGCACAGC  374

Query  434  CCACCGACTTCTCAATTTCATGAAGAGTTACTTACTGTATCAAGGAAACCTCAGGAGAAG  493
            |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct  375  CCACCGACTTCTCACTTTCATGAAGAGTTGCTTACTGTATCAAGGAAACTTCAGGAGAAG  434

Query  494  GTACTATTGATTCAAA-CATAAGGAGAAGTCTATAAGCGCTTGAAGTTGTTTCTTT-GCG  551
            ||| | | |||||||| || |||||| ||||||||| |||  |||||||||||||| |||
Sbjct  435  GTA-T-T-GATTCAAAACACAAGGAGGAGTCTATAAACGCCAGAAGTTGTTTCTTTTGCG  491

Query  552  TCTCTGCTTGTGTTAACGCCTCTTTAGTT-GTTACAGACAATTGTTGTAAGTAAAGATAT  610
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  492  TCTCTGCTTGTGTTAACGCCTCTTTAGTTTGTTACAGACAATTGTTGTAAGTAAAGATAT  551

Query  611  TGAGATGTGGAAGTTTGATTGCAATTTGCAAGATTACTAGTTTTTACGGTCTCGTAATAT  670
            |||||||||||||||||||||||| |||| |||||| |||||||||| ||||| ||||||
Sbjct  552  TGAGATGTGGAAGTTTGATTGCAACTTGCCAGATTAGTAGTTTTTACAGTCTCTTAATAT  611

Query  671  GTTTACAATG  680
            ||||||||||
Sbjct  612  GTTTACAATG  621



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32903366285


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5