BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495887
Length=2916
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57870.1 | Symbols: eIFiso4G1 | MIF4G domain-containing prot... 4625 0.0
AT1G62410.1 | Symbols: | MIF4G domain-containing protein | chr... 254 5e-66
> AT5G57870.1 | Symbols: eIFiso4G1 | MIF4G domain-containing protein
/ MA3 domain-containing protein | chr5:23439500-23443781
FORWARD LENGTH=2946
Length=2946
Score = 4625 bits (2504), Expect = 0.0
Identities = 2808/2947 (95%), Gaps = 52/2947 (2%)
Strand=Plus/Plus
Query 1 ACCCTAATAAAGAGAAGGGATTGTGtctccttctcgacttcttcttcttcct-tc--ttc 57
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 7 ACCCTAATAAAGAGAAGGGATTGTGTCTCCTTCTCGACTTCTTCTTCTTCTTCTCATTTC 66
Query 58 tcaatctcaac---t-t-ttctc-t-tc-tctt--ct--------gagagagagagaCCC 99
||||||||||| | | ||||| | || |||| || |||||||||||||||
Sbjct 67 TCAATCTCAACTTTTCTCTTCTCTTCTCTTCTTCGCTAACGGCAGGAGAGAGAGAGACCC 126
Query 100 AGGAAGCCGATCCCTCCTCTCCTTCGATTATCGGATTCAGCGATTCATCGTCGCTGATAA 159
|| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 127 AGAAATCCGATCCCTCCTCTCCTTGGATTATCGGAGTCAGCGATTCATCGTCGCTGATAA 186
Query 160 AGCTTCTACCTTTCTCTTCCCTCTCGTCGATTTTTGTTGTGAGATTCGATTCGATC-T-A 217
|||||||| | || || |||| |||||||||||||||||||||||||||||| | |
Sbjct 187 AGCTTCTA-C---CT-TT--CTCT--TCGATTTTTGTTGTGAGATTCGATTCGATCTTAA 237
Query 218 GGCGGATTAGATCGAGGTATGCAGCAAGGCGATCAAACGGTGCTGAGCTTGAGACCTGGT 277
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GGCGGATTAGATCGAGGTATGCAGCAAGGCGATCAAACGGTTCTGAGCTTGAGACCTGGT 297
Query 278 GGCGGTCGAGGAAACAGACTTTTTGGttcctcttcttcttcttcgtctctctcttttggc 337
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 GGCGGTCGAGGAAACAGACTATTTGGTTCCTCTTCTTCTTCTTCGTCTCTCTCTTTTGGC 357
Query 338 tctctttcatcttcggatctacctctccttcgtcctcATGGTGGTGCTCCTGCTTCCTCT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTCTTTCATCTTCGGATCTACCTCTCCTTCGTCCTCATGGTGGTGCTCCTGCTTCCTCT 417
Query 398 TTTCCCTTCAAGGGTGGAGACTCGAGGTTTGATGGCCGTGAACGTGTGAAGTACACCCGT 457
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 TTTCCCTTCAAGGGTGGAGACTCGAGGTTCGATGGCCGTGAACGTGTGAAGTACACCCGT 477
Query 458 GAGCAGCTTCTGGAACTTAAAGAGATCACTCAACTCTCTGATGAAATTCTGAGAGTCCAA 517
|||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 478 GAGCAGCTCCTGGAGCTTAAAGAGACCACTCAACTCTCTGATGAAATTCTGAGAGTCCAA 537
Query 518 CGGGAAACTGCAACAGAACTGTTTGGTGAGGAAGGGACTTGGGCACGTGGGGAAAGTGTC 577
|||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 538 CGGGAAACTGCAGCTGAACTGTTTGGTGAGGAAGGGACTTGGGCACGTGGAGAAAGTGTC 597
Query 578 GTAAGCAATTTGGTTCCGGTTCAATCCGCAAGTCGCTTCTCTGAGCCAGACTCTCGCGAT 637
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 GTAAGCAATTTGGTTCCCGTTCAATCCGCAAGTCGCTTCTCTGAGCCAGACTCTCGTGAT 657
Query 638 TGGCGTAGCCGTTCTACTCAACCTCCACCTTCTGGAGAGGAAAGGTCGTGGGATAATCTC 697
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 658 TGGCGTAGCCGTTCTACTCAACCTCCACCCTCTGGGGAGGAAAGGTCGTGGGATAATCTT 717
Query 698 CGTGAAGCTAGAGATTCCAGGTATGTTGAAGCAAGCCAATATAATCGTCAAGACCAACCT 757
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 CGTGAAGCTAAAGATTCCAGGTATGTTGAAGCAAGTCAATATAATCGTCAAGACCAACCT 777
Query 758 AATTCCCAGTTTTCAAGGGCAAACATATCATCCAACCAAGGGGGTGGACCAGCTCCTGTC 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATTCCCAGTTTTCAAGGGCAAACATATCATCCAACCAAGGGGGTGGACCAGCTCCTGTC 837
Query 818 CTCGTCAAAGCCGAAGTGCCTTGGTCAGCTAGAAGAGGAAACCTTTCTGAAAATGATCGA 877
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTCGTCAAAGCCGAAGTTCCTTGGTCAGCTAGAAGAGGAAACCTTTCTGAAAATGATCGT 897
Query 878 GTTCTGAAGACTGTGAAAGGGATACTGAACAAGCTAACCCCTGAAAAGTATGACCTTCTT 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTCTGAAGACTGTGAAAGGGATACTGAACAAGCTAACCCCTGAAAAGTATGACCTTCTC 957
Query 938 AAGGGCCAACTTATTGAATCTGGCATCACATCTGCTGATATCCTGAAGGGTGTGATTACC 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGGGCCAACTTATTGAATCTGGCATCACATCTGCTGATATCCTGAAGGGTGTGATTACC 1017
Query 998 CTTATTTTTGACAAAGCTGTCCTTGAGCCGACCTTTTGCCCTATGTACGCAAAATTGTGC 1057
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 CTTATTTTTGACAAAGCTGTCCTTGAGCCGACCTTTTGCCCTATGTATGCAAAATTGTGC 1077
Query 1058 TCTGATATCAACAACAAGCTGCCCACCTTCCCACCTGCAGAGCCTGGGGATAAGGAGATT 1117
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCTGATATCAACGACCAGCTGCCCACCTTCCCACCTGCAGAGCCTGGGGATAAGGAGATT 1137
Query 1118 ACATTTAAGAGGGTTCTACTGAATATCTGTCAAGAGGCATTTGAGGGCGCTTCCCAGTTG 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 ACATTTAAGAGGGTTCTACTGAATATCTGTCAAGAGGCATTTGAGGGCGCTTCTCAGTTG 1197
Query 1178 AGGGAGGAGCTTAGACAGATGAGTGCTCCAGATCAGGAGGCTGAGCGGAATGACAAAGAA 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGGGAGGAGCTTAGACAGATGAGTGCTCCAGATCAGGAGGCTGAGCGGAATGACAAAGAA 1257
Query 1238 AAATTGTTGAAGCTCAAGACTCTAGGAAATATTCGTTTGATTGGTGAGCTTTTAAAGCAG 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1258 AAATTGTTGAAGCTCAAGACTCTAGGAAATATTCGTTTGATTGGTGAGCTTTTGAAGCAG 1317
Query 1298 AAGATGGTTCCAGAAAAGATTGTTCATCACATTGTAAAGGAGCTTCTTGGGGCCGATGAG 1357
|||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1318 AAGATGGTCCCAGAAAAGATTGTTCATCACATTGTTCAGGAGCTTCTGGGGGCCGATGAG 1377
Query 1358 AAAGTTTGTCCAGCAGAGGAAAATGTCGAAGCTATTTGTCATTTCTTCAAAACAATTGGC 1417
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1378 AAAGTTTGTCCAGCCGAGGAAAATGTCGAAGCTATTTGTCATTTCTTCAAAACTATTGGC 1437
Query 1418 AAACAACTTGACGGAAACGTGAAGTCAAAACGGATTAATGATGTATATTTCAAACGCCTA 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAACAACTTGACGGAAACGTGAAGTCAAAACGGATTAATGATGTATATTTCAAACGCCTA 1497
Query 1478 CAGGATCTGTCAAAGAATCCTCAGTTGGAACTGCGTCTGAGATTCATGGTTCAGAATATC 1537
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CAGGCTCTGTCAAAGAATCCTCAGTTGGAACTGCGTCTGAGATTCATGGTTCAGAATATC 1557
Query 1538 ATCGACATGCGCTCCAATGGCTGGGTTCCAAGGCGGGAAGAGATGAAAGCAAGAACTATA 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ATCGACATGCGCTCCAATGGCTGGGTTCCAAGGCGGGAAGAGATGAAAGCAAGAACTATA 1617
Query 1598 ACCGAAATCCATACTGAGGCAGAGAAGAATCTTGGTCTCCGACCAGGTGCCACTGCAAAT 1657
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 ACCGAAATACATACTGAGGCAGAGAAGAATCTTGGTCTCCGACCAGGTGCCACTGCAAAT 1677
Query 1658 ATGAGAAGGGGTATGGTTTCTAGTGGTGGGCCTGTGAGCCCTGGCCCTGTCTACCCTGGT 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATGAGAAGGGGTATGGTTTCTAGTGGTGGGCCTGTGAGCCCTGGCCCTGTCTACCCTGGT 1737
Query 1718 GGGCGACCTGGTGCGGGTGGCTTGATGCCTGGTATGCCTGGGACGCGAAGGATGCCTGGG 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GGGCGACCTGGTGCGGGTGGCTTGATGCCTGGTATGCCTGGGACGCGAAGGATGCCTGGG 1797
Query 1778 ATGCCCGGGGTTGACAATGATAACTGGGAGGTACCCCGGACAAGATCAATGTCTAGACGT 1837
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 ATGCCCGGAGTGGACAATGATAACTGGGAGGTACCCCGGACAAGATCAATGTCTAGACGC 1857
Query 1838 GATGGGCCAGGACCTCTGCATTCTCCAGCAGTGAGCAAGTCGGCCTCAATGAACACGAGG 1897
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GATGGGCCAGGACCTCTACATTCTCCAGCAGTGAGCAAGTCGGCCTCAATGAACACGAGG 1917
Query 1898 CTCTTACCTCAAGGCAGCAGCGGCATTATGAGTGGCAAGACAAGCGCACTGTTGCAGGGA 1957
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1918 CTCTTACCTCAAGGCAGCAGTGGCATTATGAGTGGCAAGACAAGCGCACTGTTGCAGGGA 1977
Query 1958 AGCGGTTCAGTGTCCCGCCCAGTTACCGTGTCAGCAGTACCGCCAGCACAGTCAGCTGCA 2017
|| ||||||||||| || ||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1978 AGTGGTTCAGTGTCGCGTCCAGTTACCGTGTCAGCAGAACGGCCAGCACAGTCAGTTGCA 2037
Query 2018 CCTCTGACCGTACCAGTACCGGTGGAGAAACCACAGCCTAGTGCTCCCAAGTTGAGCGAA 2077
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2038 CCTCTGACCGTACCAGTTCCGGTGGAGAAACCACAGCCTAGTGGTCCCAAGTTGAGCGAA 2097
Query 2078 GAAGTGCTCCAAAGAAAAACAAAGTCACTTCTCGAGGAATATTTCAATGTCCGACTTCGT 2137
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 2098 GAAGTGCTCCAAAGAAAAACAAAGTCGCTTCTCGAGGAATATTTCAATGTCCGACTACTT 2157
Query 2138 GATGAAGCTCTGCAGTGTGTAGAGGAGCTTGGGTCT-CCTTCATATCATCCAGAGTTTGT 2196
| |||||||||||||||||||||||||||||| | | || |||||||| |||||||||||
Sbjct 2158 GGTGAAGCTCTGCAGTGTGTAGAGGAGCTTGGTT-TGCCGTCATATCACCCAGAGTTTGT 2216
Query 2197 GAAGGAAGCAATATCCCTGTCCCTTGAGAAAAGCCCGCCTGTCGTCGAGCCAATTGCTG- 2255
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2217 GAAGGAAGCAATATCCCTGTCTCTTGAGAAAAGCCCGCCTGTCGTTGAGCCAATTGCTAC 2276
Query 2256 ATCTCTTGGAGTATTTGTTATCAAAGAAGGTACTCACACCCAAGGATCTTGAAACCGGGT 2315
| |||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 2277 A-CTCTTGGAGTATTTGTTATCAAAGAAGGTAGTCGCACCCAAGGATCTTGAAACTGGGT 2335
Query 2316 TCTTGCTCTATGGTGCTATGCTGGACGACATTGGAATTGATCTTCCTAAGGCACCAAACA 2375
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2336 TCTTGCTCTACGGTGCTATGTTGGACGACATTGGAATTGATCTTCCTAAGGCACCAAACA 2395
Query 2376 ACTTTGGTGAGATTGTGGGAAAGCTGATTCTGGCTGGTGGTGTGGATTTCAAGTTGGTTA 2435
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2396 ATTTTGGTGAGATTGTGGGAAAGCTGATTCTGGCTGGTGGTGTGGATTTCAAATTGGTTA 2455
Query 2436 GAGAAATTATAGGGAAGATGGAAGACGATAGGTTCCAGAAGATGGTGGCCAATGCAGCTC 2495
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2456 GAGAAATTATAGGGAAGATGGAAGACGATAGGTTCCAGAAGATGGTGGTCGATGCAGCTG 2515
Query 2496 TACGCATCGTGGAGTCGAGTGAGCAGGGGAAGTCCCTGTTGGCCTCACAGGCAGCAGACG 2555
||||||| |||||||| || ||||||||||||||| |||||||||||||||| ||||||
Sbjct 2516 TACGCATTGTGGAGTCAAGCGAGCAGGGGAAGTCCTTGTTGGCCTCACAGGCTGCAGACA 2575
Query 2556 TAGAGGCTTGTCGGAATCTGTAAAAGGAATCATTGCTTTACGATTTTGCTCTCTCTGGGT 2615
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2576 TAGAGGCTTGTCGGAATCTGTAAAAGGAATCATTACTTGACGATTTTGCTCTCTCTGGGT 2635
Query 2616 CTTATGCTTGTGCGATGAATGTTGTGTTGTAAGCTTGAAGGAGGAGGAGAAGAGGATTCT 2675
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2636 CTTATGCTTGTGCGATGAATGTTGTGTTGTAAGCTTGAAGGAGGAGGAGAAAAGGATTCT 2695
Query 2676 CAGAACTCAAAAATAGTTTTGCTCTTCTTTGAAGCTTTTG-TTATGACATTATTCTCACC 2734
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2696 CAGAACTCAAAAATAGTTTTGCTCTTCGTTGAAGCTTTTTCTTATGACATTATTCTCACC 2755
Query 2735 ACTCTTGTTTGTGGGGATGTGTCCTTGTCcttttttgtattcttctgagacttctctttt 2794
|||||| |||||||| ||| |||| |||||||||||||||||||||| ||||| ||||||
Sbjct 2756 ACTCTTCTTTGTGGGCATGAGTCCATGTCCTTTTTTGTATTCTTCTGTGACTTGTCTTTT 2815
Query 2795 ctatttttttgacctttgcatttttgttttACGGTCTCAGTTATT-----CAGTTGATTG 2849
| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2816 -T-TT-----GACCTTTGCATTTTTGTTTTACGGTCTCAGTTATTATATTCAGTTGATTG 2868
Query 2850 TTGTTGAGACTTTGAGACCCCTATAAACTTGGTCGGTTCAGATAAATTACATTGGAAATG 2909
|||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 2869 TTGTTGAGACTT-GAGACCCCTATAAACT-GGTCGGTTCAGATAA-TTACATTGGAAATG 2925
Query 2910 TTTGATC 2916
|||||||
Sbjct 2926 TTTGATC 2932
> AT1G62410.1 | Symbols: | MIF4G domain-containing protein | chr1:23092915-23093869
FORWARD LENGTH=672
Length=672
Score = 254 bits (137), Expect = 5e-66
Identities = 438/579 (76%), Gaps = 38/579 (7%)
Strand=Plus/Plus
Query 995 ACCCTTATTTTTGACAAAGCTGTCCTTGAGCCGACCTTTTGCCCTATGTACGCAAAATTG 1054
||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 43 ACCCTTATTTTCGACAAAGCAGTCCTTGAGCCGACCTTTTGCCCTATGTACGCTCAATTG 102
Query 1055 TGCTCTGATATCAACAACAAGCTGCCCACCTTCCCACCTGCAGAGCCTGGGGA-TAAGGA 1113
|||| ||||||| | |||| |||| | || |||||| ||| |||| | | | | ||
Sbjct 103 TGCTTTGATATCCGCCACAAAATGCCTAGGTTTCCACCTTCAGCGCCTAAG-ACTGATGA 161
Query 1114 GAT-TACATTTAAGAGGGTTCTACTGAATATC-TGTCAAGAGGCATTTGAGGGCGCTTCC 1171
||| | |||| ||||||||| | ||||| | | |||||| ||| |||||| | || |
Sbjct 162 GATCT-CATTCAAGAGGGTTTTGCTGAACA-CATGTCAAAAGGTGTTTGAGAGAACTGAC 219
Query 1172 CAGTTGAGGGAGGAGCTTAGACAGATGAGTGCTCCAGATCAGGAGGCTGAGCGG-AATGA 1230
| || || |||||| ||||| |||||| || |||||||||||||| || ||| || ||
Sbjct 220 GACTTAAGTGAGGAGATTAGAAAGATGAACGCGCCAGATCAGGAGGCCGAACGGGAA-GA 278
Query 1231 CAAAGAAAAATTGTTGAAGCTCAAGACTCTAGGAAATATTCGTTTGAT-TGGTGAGCTTT 1289
| ||| || | ||||||| ||| ||||||||||||| ||||||| | |||||||||||
Sbjct 279 CGAAGTAAGACTGTTGAACCTCCGGACTCTAGGAAATCTTCGTTTT-TGTGGTGAGCTTT 337
Query 1290 TAAAGCAGAAGATGGTTC-CAGAAAAGATTGTTC-ATCACATTG-TAAAGGAGCTTCTTG 1346
| | || |||| || |||||||| ||||| | | ||||| | | | ||||| |||
Sbjct 338 TTTTGAAGCGGATG-TTGACAGAAAAGGTTGTTTTAGC-CATTGGTCA-GAAGCTT-TTG 393
Query 1347 G-GGCCGATGAG-AAAGTTTGTCCAGCAGAGGAAAATGTCGA-AGCTATTTGTCA-TTTC 1402
| || | |||| ||| | |||||| |||||||||| | | ||||||||||| ||||
Sbjct 394 GAGGATGCTGAGCAAA-TGTGTCCATCAGAGGAAAAAATT-ATAGCTATTTGTCTCTTTC 451
Query 1403 TTCAAAACAATTGGCAAACAA-CTTGACGGAAACGTGAAGTCAAAACGGATTAATGATGT 1461
| ||| || |||||||| || ||||| | |||| ||||||| ||| || || |
Sbjct 452 T-CAACACTGTTGGCAAA-AAGCTTGATTCAT---TGAACTCAAAACTGATGAACGA-G- 504
Query 1462 ATATTTCAA-ACGCCTACAGGATCTGTCAAAGAATCCTCAGTTGGA-ACTGCGTCTGA-G 1518
|| ||| || ||| || || |||||||||| ||||||| |||| | || | || | |
Sbjct 505 AT-TTT-AAGACGTTTAAAGAATCTGTCAAATCATCCTCAATTGGTTA-TGAG-CTTAAG 560
Query 1519 ATTCATGGTTCAGAATATCATCGACATGCGCTCCAATGG 1557
||| |||||| ||| |||||| | ||| ||||| |||
Sbjct 561 ATTAATGGTTGGGAAGATCATCCATTTGCACTCCATTGG 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144932298327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5